Structural alterations far from the anticodon of the tRNAProGGG of Salmonella typhimurium induce +1 frameshifting at the peptidyl-site

J Mol Biol. 1997 Nov 14;273(5):978-92. doi: 10.1006/jmbi.1997.1363.

Abstract

A total of 12 Salmonella typhimurium mutants were selected with mutations in the minor tRNAProGGG which suppress a +1 frameshift mutation in the hisD gene. This tRNA normally has 1-methylguanosine (m1G37) next to and 3' of the anticodon (position 37). Since the presence of m1G37 prevents frameshifting, some of the +1 frameshift suppressor derivatives of tRNAProGGG had alterations in the primary sequence abolishing the formation of m1G37. However, several of the mutant tRNAProGGG species had a normal level of m1G37 and a normal-sized anticodon loop, showing that neither m1G37 deficiency, nor an oversized anticodon loop, is a prerequisite for +1 frameshifting. Moreover, base substitutions far from the anticodon, e.g. in the acceptor stem, DHU-loop and stem, and at the top of the anticodon stem, promoted +1 frameshifting. When the frameshifting site (CCC-Uaa; CCC is in the zero frame and a +1 frameshift moves the ribosome to the CC-U codon) is overlapped by a nonsense codon (UAA), the efficiency of frameshifting decreased when release factor 1 was over-expressed and increased at an elevated temperature in a mutant with a temperature-sensitive release factor 1. The frameshifting site (CCC-Uac) was also overlapped with the sense codon UAC, which is decoded by a tRNA species having a 2-methylthio-cis ribozeatin (ms2io6A) at position 37. Mutations in the miaA gene affect the formation of this modified nucleoside and result in an A instead of ms2io6A37 in the tRNA. Such an undermodified tRNA is very inefficient in translation and the efficiency of frameshifting increased in a miaA1 mutant. These results suggest that the frameshifting event occurs at the P-site, since the efficiency of frameshifting was sensitive to the decoding activity of the overlapping codon. We conclude that tRNA with mutations far from the anticodon, with a normal-sized anticodon loop and having m1G37 induce +1 frameshifting at the P-site.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alcohol Oxidoreductases*
  • Anticodon*
  • Bacterial Proteins / genetics*
  • Base Sequence
  • Chromosomes, Bacterial / genetics
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics*
  • Frameshift Mutation*
  • Gene Expression Regulation, Bacterial
  • Genes, Reporter
  • Genetic Code
  • Guanosine / analogs & derivatives
  • Guanosine / chemistry
  • Molecular Sequence Data
  • Mutagenesis, Insertional
  • Nucleic Acid Conformation
  • Peptide Chain Elongation, Translational*
  • Plasmids / genetics
  • RNA, Bacterial / genetics*
  • RNA, Transfer, Amino Acyl / genetics*
  • RNA, Transfer, Pro / genetics*
  • Recombinant Fusion Proteins / biosynthesis
  • Salmonella typhimurium / genetics*
  • Temperature

Substances

  • Anticodon
  • Bacterial Proteins
  • DNA, Bacterial
  • RNA, Bacterial
  • RNA, Transfer, Amino Acyl
  • RNA, Transfer, Pro
  • Recombinant Fusion Proteins
  • Guanosine
  • 1-methylguanosine
  • Alcohol Oxidoreductases
  • histidinol dehydrogenase