Functional analysis of DNA bending and unwinding by the high mobility group domain of LEF-1

Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):12845-50. doi: 10.1073/pnas.94.24.12845.

Abstract

LEF-1 (lymphoid enhancer-binding factor 1) is a cell type-specific member of the family of high mobility group (HMG) domain proteins that recognizes a specific nucleotide sequence in the T cell receptor (TCR) alpha enhancer. In this study, we extend the analysis of the DNA-binding properties of LEF-1 and examine their contributions to the regulation of gene expression. We find that LEF-1, like nonspecific HMG-domain proteins, can interact with irregular DNA structures such as four-way junctions, albeit with lower efficiency than with specific duplex DNA. We also show by a phasing analysis that the LEF-induced DNA bend is directed toward the major groove. In addition, we find that the interaction of LEF-1 with a specific binding site in circular DNA changes the linking number of DNA and unwinds the double helix. Finally, we identified two nucleotides in the LEF-1-binding site that are important for protein-induced DNA bending. Mutations of these nucleotides decrease both the extent of DNA bending and the transactivation of the TCR alpha enhancer by LEF-1, suggesting a contribution of protein-induced DNA bending to the function of TCR alpha enhancer.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA, Superhelical / chemistry*
  • DNA, Superhelical / genetics
  • DNA, Superhelical / metabolism
  • DNA-Binding Proteins / metabolism*
  • Enhancer Elements, Genetic
  • High Mobility Group Proteins / metabolism*
  • Lymphoid Enhancer-Binding Factor 1
  • Mutagenesis
  • Nucleic Acid Conformation*
  • Protein Binding
  • Receptors, Antigen, T-Cell, alpha-beta / genetics
  • Transcription Factors / metabolism*

Substances

  • DNA, Superhelical
  • DNA-Binding Proteins
  • High Mobility Group Proteins
  • Lymphoid Enhancer-Binding Factor 1
  • Receptors, Antigen, T-Cell, alpha-beta
  • Transcription Factors