Cloning, functional analysis, and transcriptional regulation of the Bacillus subtilis araE gene involved in L-arabinose utilization

J Bacteriol. 1997 Dec;179(24):7705-11. doi: 10.1128/jb.179.24.7705-7711.1997.

Abstract

The Bacillus subtilis araR locus (mapped at about 294 degrees on the genetic map) comprises two open reading frames with divergently arranged promoters, the regulatory gene, araR, encoding a repressor, and a partially cloned gene, termed araE by analogy to the Escherichia coli L-arabinose permease gene. Here, we report the cloning and sequencing of the entire araE gene encoding a 50.4-kDa polypeptide. The araE gene is monocistronic (as determined by Northern blot analysis), and its putative product is very similar to a number of prokaryotic proton-linked monosaccharide transporters (the group I family of membrane transport proteins). Insertional inactivation of the araE gene leads to a conditional Ara- phenotype dependent on the concentration of L-arabinose in the medium. Therefore, we assume that araE encodes a permease involved in L-arabinose transport into the cell. The araE promoter region contains -10 and -35 regions (as determined by primer extension analysis) very similar to those recognized by RNA polymerase containing the major vegetative-cell sigma factor sigmaA, and the -35 region of the transcription start point for araE is located 2 bp from the -35 region of the araR gene. Transcriptional studies demonstrated that the expression from the araE promoter is induced by L-arabinose, repressed by glucose, and negatively regulated by AraR. These observations are consistent with a model according to which in the absence of L-arabinose, AraR binds to a site(s) within the araE/araR promoter, preventing transcription from the araE promoter and simultaneously limiting the frequency of initiation from its own promoter; the addition of L-arabinose will allow transcription from the araE promoter and increase the frequency of initiation from the araR promoter.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • AraC Transcription Factor
  • Arabinose / metabolism*
  • Bacillus subtilis / genetics*
  • Bacterial Proteins*
  • Base Sequence
  • Biological Transport
  • Cloning, Molecular
  • Escherichia coli Proteins*
  • Gene Expression Regulation, Bacterial*
  • Genes, Bacterial*
  • Molecular Sequence Data
  • Monosaccharide Transport Proteins / genetics*
  • Promoter Regions, Genetic
  • RNA, Bacterial / genetics
  • RNA, Messenger / genetics
  • Recombinant Fusion Proteins / biosynthesis
  • Repressor Proteins / metabolism
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Stereoisomerism
  • Transcription Factors*
  • Transcription, Genetic

Substances

  • AraC Transcription Factor
  • AraC protein, E coli
  • AraE protein, bacteria
  • Bacterial Proteins
  • Escherichia coli Proteins
  • Monosaccharide Transport Proteins
  • RNA, Bacterial
  • RNA, Messenger
  • Recombinant Fusion Proteins
  • Repressor Proteins
  • Transcription Factors
  • araE protein, E coli
  • Arabinose

Associated data

  • GENBANK/Y12105