5-(5,6-Dichloro-2-indolyl)-2-methoxy-2,4-pentadienamides: novel and selective inhibitors of the vacuolar H+-ATPase of osteoclasts with bone antiresorptive activity

J Med Chem. 1998 May 7;41(10):1568-73. doi: 10.1021/jm9800144.


The vacuolar H+-ATPase (V-ATPase), located on the ruffled border of the osteoclast, is a proton pump which is responsible for secreting the massive amounts of protons that are required for the bone resorption process. With the aim to identify new agents which are able to prevent the excessive bone resorption associated with osteoporosis, we have designed a novel class of potent and selective inhibitors of the osteoclast proton pump, starting from the structure of the specific V-ATPase inhibitor bafilomycin A1. Compounds 3a-d potently inhibited the V-ATPase in chicken osteoclast membranes (IC50 = 60-180 nM) and were able to prevent bone resorption by human osteoclasts in vitro at low-nanomolar concentrations. Notably, the EC50 of compound 3c in this assay was 45-fold lower than the concentration required for half-maximal inhibition of the V-ATPase from human kidney cortex. These results support the validity of the osteoclast proton pump as a useful molecular target to produce novel inhibitors of bone resorption, potentially useful as antiosteporotic agents.

Publication types

  • Comparative Study

MeSH terms

  • Animals
  • Bone Resorption / prevention & control*
  • Bridged Bicyclo Compounds, Heterocyclic* / chemical synthesis
  • Bridged Bicyclo Compounds, Heterocyclic* / pharmacology
  • Cell Membrane
  • Chickens
  • Enzyme Inhibitors* / chemical synthesis
  • Enzyme Inhibitors* / pharmacology
  • Humans
  • Indoles* / chemical synthesis
  • Indoles* / pharmacology
  • Kidney Cortex / enzymology
  • Osteoclasts / drug effects*
  • Osteoclasts / enzymology
  • Osteoclasts / ultrastructure
  • Proton-Translocating ATPases / antagonists & inhibitors*
  • Pyrimidines* / chemical synthesis
  • Pyrimidines* / pharmacology
  • Tumor Cells, Cultured
  • Vacuoles / drug effects*
  • Vacuoles / enzymology


  • 5-(5,6-dichloro-2-indolyl)-2--methoxy-N-(3-(4-(2-pyrimidinyl)piperazin-1-yl)propyl)-2,4-pentadienamide
  • 5-(5,6-dichloro-2-indolyl)-2-methoxy-N-(8-methyl-8-azabicyclo(3.2.2)oct-3-yl)-2,4-pentadienamide
  • Bridged Bicyclo Compounds, Heterocyclic
  • Enzyme Inhibitors
  • Indoles
  • Pyrimidines
  • Proton-Translocating ATPases