Structure determination of the Ras-binding domain of the Ral-specific guanine nucleotide exchange factor Rlf

Biochemistry. 1998 Sep 29;37(39):13453-62. doi: 10.1021/bi9811664.

Abstract

Ral-specific guanine nucleotide exchange factors RalGDS, Rgl, and Rlf have been suggested to function as intermediates between Ras and Ral pathways by being able to bind Ras proteins through their C-terminal Ras-binding domains (RBD). The RBDs of RalGDS and of the Ser/Thr kinase c-Raf-1 have been shown to have the same tertiary structure. In contrast to the RBDs of Raf and RalGDS, which bind either Ras or Rap with high affinity, Rlf-RBD has a similar affinity for both GTP-binding proteins. To be able to compare these RBDs on a structural level, we have solved the three-dimensional structure of Rlf-RBD by NMR spectroscopy. The overall tertiary structure of Rlf-RBD shows the betabetaalphabetabetaalphabeta-fold of the ubiquitin superfamily and is very similar to that of RalGDS-RBD. The binding interface of Rlf-RBD to Ras was mapped using chemical shift analysis and indicated a binding mode similar to that in the case of Rap.Raf-RBD. However, comparison of the putatively interacting regions revealed structural differences which are proposed to be responsible for the different substrate affinities of Rlf-, RalGDS-, and Raf-RBD.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Crystallography, X-Ray
  • GTP-Binding Proteins / chemistry*
  • GTP-Binding Proteins / metabolism
  • Guanine Nucleotide Exchange Factors
  • Guanylyl Imidodiphosphate / chemistry
  • Macromolecular Substances
  • Mice
  • Models, Molecular
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Protein Binding
  • Protein Folding
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Sequence Homology, Amino Acid
  • Substrate Specificity
  • Transcription Factors / chemistry*
  • Transcription Factors / metabolism
  • ral Guanine Nucleotide Exchange Factor
  • rap GTP-Binding Proteins
  • ras Proteins / metabolism*

Substances

  • Guanine Nucleotide Exchange Factors
  • Macromolecular Substances
  • Rgl2 protein, mouse
  • Transcription Factors
  • ral Guanine Nucleotide Exchange Factor
  • Guanylyl Imidodiphosphate
  • GTP-Binding Proteins
  • rap GTP-Binding Proteins
  • ras Proteins

Associated data

  • PDB/1RLF