Nucleotide sequences of the trailer, nucleocapsid protein gene and intergenic regions of Newcastle disease virus strain Beaudette C and completion of the entire genome sequence

J Gen Virol. 1998 Oct:79 ( Pt 10):2419-24. doi: 10.1099/0022-1317-79-10-2419.

Abstract

The nucleotide sequences of the nucleocapsid protein (NP) gene, the intergenic regions in the nucleocapsid protein (NP)-phosphoprotein (P), P-matrix protein (M) and M-fusion glycoprotein gene junctions and the trailer region of a virulent Newcastle disease virus (NDV) strain Beaudette C were determined. The NP gene is 1747 nt long and encodes a protein of 489 amino acids. Each of the intergenic sequences determined is 1 nt long and, including the previously published intergenic sequences, the gene junction sequences varied in length from 1-47 nt and lacked any sequence identity. The 5' trailer region is 113 nt in length. Comparison of the sequences of the terminal leader and trailer regions of Beaudette C strain with those of nonvirulent strain B1 showed a high level of conservation, indicating the likelihood of these elements not being a factor in virulence. Together with previously published data, this report completes the sequence of the 15,186 nt genomic RNA of NDV strain Beaudette C.

MeSH terms

  • Base Sequence
  • Genome, Viral*
  • Molecular Sequence Data
  • Newcastle disease virus / genetics*
  • Nucleocapsid / genetics*
  • RNA, Viral / chemistry*

Substances

  • RNA, Viral

Associated data

  • GENBANK/AF064091
  • GENBANK/X64275