Regulation of expression of the amino acid transporter gene BAP3 in Saccharomyces cerevisiae

Mol Microbiol. 1998 Nov;30(3):603-13. doi: 10.1046/j.1365-2958.1998.01094.x.


The BAP3 gene of Saccharomyces cerevisiae encodes a protein with a high similarity to the BAP2 gene product, a high-affinity permease for branched-chain amino acids. In this paper, we show that, like BAP2, the expression of the BAP3 gene in S. cerevisiae is induced by the addition of branched-chain amino acids to the medium. Unexpectedly, most other naturally occurring L-amino acids found in proteins (with the exception of proline, lysine, arginine and histidine) have the same effect on the expression of BAP3. The induction of BAP3 expression appears to be dependent on Stp1p, a nuclear protein, previously shown to be involved in pre-tRNA maturation and also required for the expression of BAP2, as induction is no longer observed in an stp1 - mutant. The transcriptional regulator Leu3p is not involved in the induction of BAP3 expression, but may act as a repressor of BAP3 expression in the absence of leucine, as can be inferred from a transcriptional analysis in a Deltaleu3 mutant. By extensive deletion analysis of the BAP3 promoter fused to a GUS reporter, as well as by fusions of different parts of the BAP3 promoter to a LacZ reporter, we have found that a portion of the BAP3 promoter from - 418 to - 392 relative to the ATG start codon is both necessary and sufficient for the Stp1p-dependent induction of BAP3 expression by (most) amino acids. We have therefore named this sequence UASaa (amino acid-dependent upstream activator sequence). Neither Stp1p nor Leu3p appear to bind to the UASaa, at least in vitro, as judged from gel retardation assays. Sequences similar to the UASaa can be found in the promoters of BAP2, PTR2 and TAT1; genes that, like BAP3, encode permeases inducible by amino acids, suggesting that amino acid induction of all these genes is exerted via a common mechanism.

MeSH terms

  • Amino Acid Transport Systems*
  • Amino Acids / pharmacology
  • Biological Transport / genetics
  • Carrier Proteins / genetics*
  • DNA-Binding Proteins / analysis
  • Fungal Proteins / genetics
  • Gene Expression Regulation, Fungal / genetics*
  • Genes, Fungal / genetics
  • Genes, Reporter / genetics
  • Lac Operon / genetics
  • Leucine / pharmacology
  • Membrane Proteins / genetics*
  • Membrane Transport Proteins / genetics*
  • Nuclear Proteins / genetics
  • Polynucleotide Adenylyltransferase*
  • Promoter Regions, Genetic / genetics
  • RNA, Messenger / genetics
  • RNA-Binding Proteins*
  • Recombinant Fusion Proteins / genetics
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae Proteins*
  • Sequence Deletion / genetics
  • Transcription Factors*
  • Transcription, Genetic / genetics
  • Transcriptional Activation / genetics


  • Amino Acid Transport Systems
  • Amino Acids
  • BAP2 protein, S cerevisiae
  • BAP3 protein, S cerevisiae
  • Carrier Proteins
  • DNA-Binding Proteins
  • Fungal Proteins
  • Membrane Proteins
  • Membrane Transport Proteins
  • Nuclear Proteins
  • RNA, Messenger
  • RNA-Binding Proteins
  • Recombinant Fusion Proteins
  • STP1 protein, S cerevisiae
  • Saccharomyces cerevisiae Proteins
  • Transcription Factors
  • PAP1 protein, S cerevisiae
  • Polynucleotide Adenylyltransferase
  • Leucine