Structures of Cdc42 bound to the active and catalytically compromised forms of Cdc42GAP

Nat Struct Biol. 1998 Dec;5(12):1047-52. doi: 10.1038/4156.


The Rho-related small GTP-binding protein Cdc42 has a low intrinsic GTPase activity that is significantly enhanced by its specific GTPase-activating protein, Cdc42GAP. In this report, we present the tertiary structure for the aluminum fluoride-promoted complex between Cdc42 and a catalytically active domain of Cdc42GAP as well as the complex between Cdc42 and the catalytically compromised Cdc42GAP(R305A) mutant. These structures, which mimic the transition state for the GTP hydrolytic reaction, show the presence of an AIF3 molecule, as was seen for the corresponding Ras-p120RasGAP complex, but in contrast to what has been reported for the Rho-Cdc42GAP complex or for heterotrimeric G protein alpha subunits, where AIF4- was observed. The Cdc42GAP stabilizes both the switch I and switch II domains of Cdc42 and contributes a highly conserved arginine (Arg 305) to the active site. Comparison of the structures for the wild type and mutant Cdc42GAP complexes provides important insights into the GAP-catalyzed GTP hydrolytic reaction.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Aluminum Compounds / metabolism
  • Animals
  • Arginine
  • Binding Sites
  • Catalytic Domain
  • Cell Cycle Proteins / chemistry
  • Cell Cycle Proteins / metabolism*
  • Escherichia coli
  • Fluorides / metabolism
  • GTP Phosphohydrolases / metabolism*
  • GTP-Binding Proteins / chemistry
  • GTP-Binding Proteins / metabolism*
  • GTPase-Activating Proteins
  • Models, Chemical
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Conformation*
  • Proteins / chemistry
  • Proteins / metabolism*
  • cdc42 GTP-Binding Protein
  • ras GTPase-Activating Proteins
  • ras Proteins / chemistry
  • ras Proteins / metabolism*


  • Aluminum Compounds
  • Cell Cycle Proteins
  • GTPase-Activating Proteins
  • Proteins
  • ras GTPase-Activating Proteins
  • Arginine
  • GTP Phosphohydrolases
  • GTP-Binding Proteins
  • cdc42 GTP-Binding Protein
  • ras Proteins
  • Fluorides
  • aluminum fluoride

Associated data

  • PDB/1GRN
  • PDB/2NRG