High-density screen of human tumor cell lines for homozygous deletions of loci on chromosome arm 8p

Genes Chromosomes Cancer. 1999 Jan;24(1):42-7. doi: 10.1002/(sici)1098-2264(199901)24:1<42::aid-gcc6>3.0.co;2-f.

Abstract

Tumor cell-specific homozygous deletions coinciding at a particular genetic location may indicate the inactivation of a nearby tumor suppressor gene. Forty-six human cancer cell lines of prostate, pancreatic, lung, liver, and colon origin were screened for homozygous deletions of 139 expressed sequence tag (EST) and sequence-tagged site (STS) loci spanning the entire short arm of chromosome 8. Only one Southern blot-verified homozygous deletion was detected in this set of cell lines. The deletion, in pancreatic tumor cell line MIA-PaCa-2, encompassed two screening loci, D8S549 and D8S1992, and overlapped another previously described homozygous deletion of band 8p22 in a metastatic prostate cancer specimen. Both deletions entirely removed the candidate tumor suppressor gene N33. These data define a consensus homozygous deletion region in chromosome band 8p22.

MeSH terms

  • Chromosome Deletion*
  • Chromosome Mapping / methods
  • Chromosomes, Human, Pair 8 / genetics*
  • DNA, Neoplasm / analysis
  • Genetic Markers
  • Homozygote*
  • Humans
  • Male
  • Neoplasms / genetics*
  • Polymerase Chain Reaction / methods
  • Tumor Cells, Cultured

Substances

  • DNA, Neoplasm
  • Genetic Markers