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KOMB: K-core based de novo characterization of copy number variation in microbiomes.
Balaji A, Sapoval N, Seto C, Leo Elworth RA, Fu Y, Nute MG, Savidge T, Segarra S, Treangen TJ. Balaji A, et al. Among authors: segarra s. Comput Struct Biotechnol J. 2022 Jun 17;20:3208-3222. doi: 10.1016/j.csbj.2022.06.019. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35832621 Free PMC article.
Effects of the oral administration of glycosaminoglycans with or without native type II collagen on the articular cartilage transcriptome in an osteoarthritic-induced rabbit model.
Mariné-Casadó R, Domenech-Coca C, Fernández S, Costa A, Segarra S, López-Andreo MJ, Puiggròs F, Cerón JJ, Martínez-Puig D, Soler C, Sifre V, Serra CI, Caimari A. Mariné-Casadó R, et al. Among authors: segarra s. Genes Nutr. 2024 Sep 4;19(1):19. doi: 10.1186/s12263-024-00749-2. Genes Nutr. 2024. PMID: 39232650 Free PMC article.
Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs.
Curry KD, Yu FB, Vance SE, Segarra S, Bhaya D, Chikhi R, Rocha EPC, Treangen TJ. Curry KD, et al. Among authors: segarra s. bioRxiv [Preprint]. 2024 Jan 30:2024.01.25.577285. doi: 10.1101/2024.01.25.577285. bioRxiv. 2024. Update in: Bioinformatics. 2024 Jun 28;40(Suppl 1):i58-i67. doi: 10.1093/bioinformatics/btae224. PMID: 38352454 Free PMC article. Updated. Preprint.
47 results