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Similar Articles for PMID: 26583253

101 results
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Surprisal Metrics for Quantifying Perturbed Conformational Dynamics in Markov State Models.
Voelz VA, Elman B, Razavi AM, Zhou G. Voelz VA, et al. J Chem Theory Comput. 2014 Dec 9;10(12):5716-28. doi: 10.1021/ct500827g. J Chem Theory Comput. 2014. PMID: 26583253
Markov state models provide insights into dynamic modulation of protein function.
Shukla D, Hernández CX, Weber JK, Pande VS. Shukla D, et al. Acc Chem Res. 2015 Feb 17;48(2):414-22. doi: 10.1021/ar5002999. Epub 2015 Jan 3. Acc Chem Res. 2015. PMID: 25625937 Free PMC article. Review.
Improved coarse-graining of Markov state models via explicit consideration of statistical uncertainty.
Bowman GR. Bowman GR. J Chem Phys. 2012 Oct 7;137(13):134111. doi: 10.1063/1.4755751. J Chem Phys. 2012. PMID: 23039589 Free PMC article.
Hierarchical Nyström methods for constructing Markov state models for conformational dynamics.
Yao Y, Cui RZ, Bowman GR, Silva DA, Sun J, Huang X. Yao Y, et al. J Chem Phys. 2013 May 7;138(17):174106. doi: 10.1063/1.4802007. J Chem Phys. 2013. PMID: 23656113
A Maximum-Caliber Approach to Predicting Perturbed Folding Kinetics Due to Mutations.
Wan H, Zhou G, Voelz VA. Wan H, et al. J Chem Theory Comput. 2016 Dec 13;12(12):5768-5776. doi: 10.1021/acs.jctc.6b00938. Epub 2016 Nov 23. J Chem Theory Comput. 2016. PMID: 27951664
Using path sampling to build better Markovian state models: predicting the folding rate and mechanism of a tryptophan zipper beta hairpin.
Singhal N, Snow CD, Pande VS. Singhal N, et al. J Chem Phys. 2004 Jul 1;121(1):415-25. doi: 10.1063/1.1738647. J Chem Phys. 2004. PMID: 15260562
Automatic state partitioning for multibody systems (APM): an efficient algorithm for constructing Markov state models to elucidate conformational dynamics of multibody systems.
Sheong FK, Silva DA, Meng L, Zhao Y, Huang X. Sheong FK, et al. J Chem Theory Comput. 2015 Jan 13;11(1):17-27. doi: 10.1021/ct5007168. Epub 2014 Dec 23. J Chem Theory Comput. 2015. PMID: 26574199
Projected and hidden Markov models for calculating kinetics and metastable states of complex molecules.
Noé F, Wu H, Prinz JH, Plattner N. Noé F, et al. J Chem Phys. 2013 Nov 14;139(18):184114. doi: 10.1063/1.4828816. J Chem Phys. 2013. PMID: 24320261
Hierarchical analysis of conformational dynamics in biomolecules: transition networks of metastable states.
Noé F, Horenko I, Schütte C, Smith JC. Noé F, et al. J Chem Phys. 2007 Apr 21;126(15):155102. doi: 10.1063/1.2714539. J Chem Phys. 2007. PMID: 17461666
Markov state models based on milestoning.
Schütte C, Noé F, Lu J, Sarich M, Vanden-Eijnden E. Schütte C, et al. J Chem Phys. 2011 May 28;134(20):204105. doi: 10.1063/1.3590108. J Chem Phys. 2011. PMID: 21639422
101 results
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