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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1987 1
1992 1
1996 1
2001 1
2003 1
2004 2
2005 1
2006 1
2007 1
2008 2
2009 4
2010 8
2011 13
2012 8
2013 10
2014 23
2015 16
2016 11
2017 13
2018 9
2019 5
2020 11
2021 1
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Similar Articles for PMID: 26588361

131 results
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FAST Conformational Searches by Balancing Exploration/Exploitation Trade-Offs.
Zimmerman MI, Bowman GR. Zimmerman MI, et al. J Chem Theory Comput. 2015 Dec 8;11(12):5747-57. doi: 10.1021/acs.jctc.5b00737. Epub 2015 Nov 20. J Chem Theory Comput. 2015. PMID: 26588361
How to Run FAST Simulations.
Zimmerman MI, Bowman GR. Zimmerman MI, et al. Methods Enzymol. 2016;578:213-25. doi: 10.1016/bs.mie.2016.05.032. Epub 2016 Jun 16. Methods Enzymol. 2016. PMID: 27497168 Review.
Application of Markov State Models to simulate long timescale dynamics of biological macromolecules.
Da LT, Sheong FK, Silva DA, Huang X. Da LT, et al. Adv Exp Med Biol. 2014;805:29-66. doi: 10.1007/978-3-319-02970-2_2. Adv Exp Med Biol. 2014. PMID: 24446356
Elucidating the ensemble of functionally-relevant transitions in protein systems with a robotics-inspired method.
Molloy K, Shehu A. Molloy K, et al. BMC Struct Biol. 2013;13 Suppl 1(Suppl 1):S8. doi: 10.1186/1472-6807-13-S1-S8. Epub 2013 Nov 8. BMC Struct Biol. 2013. PMID: 24565158 Free PMC article.
Choice of Adaptive Sampling Strategy Impacts State Discovery, Transition Probabilities, and the Apparent Mechanism of Conformational Changes.
Zimmerman MI, Porter JR, Sun X, Silva RR, Bowman GR. Zimmerman MI, et al. J Chem Theory Comput. 2018 Nov 13;14(11):5459-5475. doi: 10.1021/acs.jctc.8b00500. Epub 2018 Oct 23. J Chem Theory Comput. 2018. PMID: 30240203 Free PMC article.
Extensive conformational heterogeneity within protein cores.
Bowman GR, Geissler PL. Bowman GR, et al. J Phys Chem B. 2014 Jun 19;118(24):6417-23. doi: 10.1021/jp4105823. Epub 2014 Mar 12. J Phys Chem B. 2014. PMID: 24564338 Free PMC article.
Automatic state partitioning for multibody systems (APM): an efficient algorithm for constructing Markov state models to elucidate conformational dynamics of multibody systems.
Sheong FK, Silva DA, Meng L, Zhao Y, Huang X. Sheong FK, et al. J Chem Theory Comput. 2015 Jan 13;11(1):17-27. doi: 10.1021/ct5007168. Epub 2014 Dec 23. J Chem Theory Comput. 2015. PMID: 26574199
Constructing multi-resolution Markov State Models (MSMs) to elucidate RNA hairpin folding mechanisms.
Huang X, Yao Y, Bowman GR, Sun J, Guibas LJ, Carlsson G, Pande VS. Huang X, et al. Pac Symp Biocomput. 2010:228-39. doi: 10.1142/9789814295291_0025. Pac Symp Biocomput. 2010. PMID: 19908375 Free PMC article.
Markov state models provide insights into dynamic modulation of protein function.
Shukla D, Hernández CX, Weber JK, Pande VS. Shukla D, et al. Acc Chem Res. 2015 Feb 17;48(2):414-22. doi: 10.1021/ar5002999. Epub 2015 Jan 3. Acc Chem Res. 2015. PMID: 25625937 Free PMC article. Review.
Simple, yet powerful methodologies for conformational sampling of proteins.
Harada R, Takano Y, Baba T, Shigeta Y. Harada R, et al. Phys Chem Chem Phys. 2015 Mar 7;17(9):6155-73. doi: 10.1039/c4cp05262e. Phys Chem Chem Phys. 2015. PMID: 25659594
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