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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1996 1
2004 2
2005 5
2006 1
2007 1
2008 4
2009 4
2010 6
2011 8
2012 4
2013 8
2014 16
2015 11
2016 9
2017 11
2018 15
2019 8
2020 4
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Similar Articles for PMID: 28076801

115 results
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MSMBuilder: Statistical Models for Biomolecular Dynamics.
Harrigan MP, Sultan MM, Hernández CX, Husic BE, Eastman P, Schwantes CR, Beauchamp KA, McGibbon RT, Pande VS. Harrigan MP, et al. Biophys J. 2017 Jan 10;112(1):10-15. doi: 10.1016/j.bpj.2016.10.042. Biophys J. 2017. PMID: 28076801 Free PMC article.
Using generalized ensemble simulations and Markov state models to identify conformational states.
Bowman GR, Huang X, Pande VS. Bowman GR, et al. Methods. 2009 Oct;49(2):197-201. doi: 10.1016/j.ymeth.2009.04.013. Epub 2009 May 4. Methods. 2009. PMID: 19410002 Free PMC article.
A tutorial on building markov state models with MSMBuilder and coarse-graining them with BACE.
Bowman GR. Bowman GR. Methods Mol Biol. 2014;1084:141-58. doi: 10.1007/978-1-62703-658-0_8. Methods Mol Biol. 2014. PMID: 24061920
Progress and challenges in the automated construction of Markov state models for full protein systems.
Bowman GR, Beauchamp KA, Boxer G, Pande VS. Bowman GR, et al. J Chem Phys. 2009 Sep 28;131(12):124101. doi: 10.1063/1.3216567. J Chem Phys. 2009. PMID: 19791846 Free PMC article.
Markov models for the elucidation of allosteric regulation.
Sengupta U, Strodel B. Sengupta U, et al. Philos Trans R Soc Lond B Biol Sci. 2018 Jun 19;373(1749):20170178. doi: 10.1098/rstb.2017.0178. Philos Trans R Soc Lond B Biol Sci. 2018. PMID: 29735732 Free PMC article. Review.
MasterMSM: A Package for Constructing Master Equation Models of Molecular Dynamics.
de Sancho D, Aguirre A. de Sancho D, et al. J Chem Inf Model. 2019 Sep 23;59(9):3625-3629. doi: 10.1021/acs.jcim.9b00468. Epub 2019 Aug 19. J Chem Inf Model. 2019. PMID: 31423789
Markov state models of biomolecular conformational dynamics.
Chodera JD, Noé F. Chodera JD, et al. Curr Opin Struct Biol. 2014 Apr;25:135-44. doi: 10.1016/j.sbi.2014.04.002. Epub 2014 May 16. Curr Opin Struct Biol. 2014. PMID: 24836551 Free PMC article. Review.
Markov state models provide insights into dynamic modulation of protein function.
Shukla D, Hernández CX, Weber JK, Pande VS. Shukla D, et al. Acc Chem Res. 2015 Feb 17;48(2):414-22. doi: 10.1021/ar5002999. Epub 2015 Jan 3. Acc Chem Res. 2015. PMID: 25625937 Free PMC article. Review.
Linking time-series of single-molecule experiments with molecular dynamics simulations by machine learning.
Matsunaga Y, Sugita Y. Matsunaga Y, et al. Elife. 2018 May 3;7:e32668. doi: 10.7554/eLife.32668. Elife. 2018. PMID: 29723137 Free PMC article.
Transition path theory analysis of c-Src kinase activation.
Meng Y, Shukla D, Pande VS, Roux B. Meng Y, et al. Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9193-8. doi: 10.1073/pnas.1602790113. Epub 2016 Aug 1. Proc Natl Acad Sci U S A. 2016. PMID: 27482115 Free PMC article.
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