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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2008 1
2009 1
2010 7
2011 10
2012 9
2013 9
2014 16
2015 19
2016 14
2017 12
2018 11
2019 10
2020 4
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Similar Articles for PMID: 29323881

112 results
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Markov State Models: From an Art to a Science.
Husic BE, Pande VS. Husic BE, et al. J Am Chem Soc. 2018 Feb 21;140(7):2386-2396. doi: 10.1021/jacs.7b12191. Epub 2018 Feb 2. J Am Chem Soc. 2018. PMID: 29323881 Review.
Molecular Dynamics-Markov State Model of Protein Ligand Binding and Allostery in CRIB-PDZ: Conformational Selection and Induced Fit.
Thayer KM, Lakhani B, Beveridge DL. Thayer KM, et al. J Phys Chem B. 2017 Jun 8;121(22):5509-5514. doi: 10.1021/acs.jpcb.7b02083. Epub 2017 May 25. J Phys Chem B. 2017. PMID: 28489401
Application of Markov State Models to simulate long timescale dynamics of biological macromolecules.
Da LT, Sheong FK, Silva DA, Huang X. Da LT, et al. Adv Exp Med Biol. 2014;805:29-66. doi: 10.1007/978-3-319-02970-2_2. Adv Exp Med Biol. 2014. PMID: 24446356
Optimized parameter selection reveals trends in Markov state models for protein folding.
Husic BE, McGibbon RT, Sultan MM, Pande VS. Husic BE, et al. J Chem Phys. 2016 Nov 21;145(19):194103. doi: 10.1063/1.4967809. J Chem Phys. 2016. PMID: 27875868 Free PMC article.
Markov state models provide insights into dynamic modulation of protein function.
Shukla D, Hernández CX, Weber JK, Pande VS. Shukla D, et al. Acc Chem Res. 2015 Feb 17;48(2):414-22. doi: 10.1021/ar5002999. Epub 2015 Jan 3. Acc Chem Res. 2015. PMID: 25625937 Free PMC article. Review.
Markov state model reveals folding and functional dynamics in ultra-long MD trajectories.
Lane TJ, Bowman GR, Beauchamp K, Voelz VA, Pande VS. Lane TJ, et al. J Am Chem Soc. 2011 Nov 16;133(45):18413-9. doi: 10.1021/ja207470h. Epub 2011 Oct 26. J Am Chem Soc. 2011. PMID: 21988563 Free PMC article.
A Minimum Variance Clustering Approach Produces Robust and Interpretable Coarse-Grained Models.
Husic BE, McKiernan KA, Wayment-Steele HK, Sultan MM, Pande VS. Husic BE, et al. J Chem Theory Comput. 2018 Feb 13;14(2):1071-1082. doi: 10.1021/acs.jctc.7b01004. Epub 2018 Jan 24. J Chem Theory Comput. 2018. PMID: 29253336
Ward Clustering Improves Cross-Validated Markov State Models of Protein Folding.
Husic BE, Pande VS. Husic BE, et al. J Chem Theory Comput. 2017 Mar 14;13(3):963-967. doi: 10.1021/acs.jctc.6b01238. Epub 2017 Feb 17. J Chem Theory Comput. 2017. PMID: 28195713
Why are MD simulated protein folding times wrong?
Nerukhdn D. Nerukhdn D. Adv Exp Med Biol. 2010;680:321-6. doi: 10.1007/978-1-4419-5913-3_36. Adv Exp Med Biol. 2010. PMID: 20865515
Markov state models of protein misfolding.
Sirur A, De Sancho D, Best RB. Sirur A, et al. J Chem Phys. 2016 Feb 21;144(7):075101. doi: 10.1063/1.4941579. J Chem Phys. 2016. PMID: 26897000 Free PMC article.
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