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Page 1
FUBP1 is a general splicing factor facilitating 3' splice site recognition and splicing of long introns.
Ebersberger S, Hipp C, Mulorz MM, Buchbender A, Hubrich D, Kang HS, Martínez-Lumbreras S, Kristofori P, Sutandy FXR, Llacsahuanga Allcca L, Schönfeld J, Bakisoglu C, Busch A, Hänel H, Tretow K, Welzel M, Di Liddo A, Möckel MM, Zarnack K, Ebersberger I, Legewie S, Luck K, Sattler M, König J. Ebersberger S, et al. Among authors: zarnack k. Mol Cell. 2023 Aug 3;83(15):2653-2672.e15. doi: 10.1016/j.molcel.2023.07.002. Epub 2023 Jul 27. Mol Cell. 2023. PMID: 37506698 Free article.
High-throughput approaches in RNA biology.
König J, Zarnack K. König J, et al. Among authors: zarnack k. Methods. 2020 Jun 1;178:1-2. doi: 10.1016/j.ymeth.2020.04.002. Epub 2020 Apr 8. Methods. 2020. PMID: 32278015 No abstract available.
Depletion of the RNA-binding protein PURA triggers changes in posttranscriptional gene regulation and loss of P-bodies.
Molitor L, Klostermann M, Bacher S, Merl-Pham J, Spranger N, Burczyk S, Ketteler C, Rusha E, Tews D, Pertek A, Proske M, Busch A, Reschke S, Feederle R, Hauck SM, Blum H, Drukker M, Fischer-Posovszky P, König J, Zarnack K, Niessing D. Molitor L, et al. Among authors: zarnack k. Nucleic Acids Res. 2023 Feb 22;51(3):1297-1316. doi: 10.1093/nar/gkac1237. Nucleic Acids Res. 2023. PMID: 36651277 Free PMC article.
Pathogenic proteotoxicity of cryptic splicing is alleviated by ubiquitination and ER-phagy.
Prieto-Garcia C, Matkovic V, Mosler T, Li C, Liang J, Oo JA, Haidle F, Mačinković I, Cabrera-Orefice A, Berkane R, Giuliani G, Xu F, Jacomin AC, Tomaskovic I, Basoglu M, Hoffmann ME, Rathore R, Cetin R, Boutguetait D, Bozkurt S, Hernández Cañás MC, Keller M, Busam J, Shah VJ, Wittig I, Kaulich M, Beli P, Galej WP, Ebersberger I, Wang L, Münch C, Stolz A, Brandes RP, Tse WKF, Eimer S, Stainier DYR, Legewie S, Zarnack K, Müller-McNicoll M, Dikic I. Prieto-Garcia C, et al. Among authors: zarnack k. Science. 2024 Nov 15;386(6723):768-776. doi: 10.1126/science.adi5295. Epub 2024 Nov 14. Science. 2024. PMID: 39541449
Prediction of m6A and m5C at single-molecule resolution reveals a transcriptome-wide co-occurrence of RNA modifications.
Acera Mateos P, J Sethi A, Ravindran A, Srivastava A, Woodward K, Mahmud S, Kanchi M, Guarnacci M, Xu J, W S Yuen Z, Zhou Y, Sneddon A, Hamilton W, Gao J, M Starrs L, Hayashi R, Wickramasinghe V, Zarnack K, Preiss T, Burgio G, Dehorter N, E Shirokikh N, Eyras E. Acera Mateos P, et al. Among authors: zarnack k. Nat Commun. 2024 May 9;15(1):3899. doi: 10.1038/s41467-024-47953-7. Nat Commun. 2024. PMID: 38724548 Free PMC article.
mRNA trafficking in fungi.
Zarnack K, Feldbrügge M. Zarnack K, et al. Mol Genet Genomics. 2007 Oct;278(4):347-59. doi: 10.1007/s00438-007-0271-8. Epub 2007 Sep 1. Mol Genet Genomics. 2007. PMID: 17768642 Review.
Microtubule-dependent mRNA transport in fungi.
Zarnack K, Feldbrügge M. Zarnack K, et al. Eukaryot Cell. 2010 Jul;9(7):982-90. doi: 10.1128/EC.00030-10. Epub 2010 May 14. Eukaryot Cell. 2010. PMID: 20472693 Free PMC article. Review.
High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance.
Cortés-López M, Schulz L, Enculescu M, Paret C, Spiekermann B, Quesnel-Vallières M, Torres-Diz M, Unic S, Busch A, Orekhova A, Kuban M, Mesitov M, Mulorz MM, Shraim R, Kielisch F, Faber J, Barash Y, Thomas-Tikhonenko A, Zarnack K, Legewie S, König J. Cortés-López M, et al. Among authors: zarnack k. Nat Commun. 2022 Sep 22;13(1):5570. doi: 10.1038/s41467-022-31818-y. Nat Commun. 2022. PMID: 36138008 Free PMC article.
78 results