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Taming the Duplication-Loss-Coalescence Model with Integer Linear Programming.

Paszek J, Markin A, Górecki P, Eulenstein O. Paszek J, et al. Among authors: markin a. J Comput Biol. 2021 Aug;28(8):758-773. doi: 10.1089/cmb.2021.0011. Epub 2021 Apr 16. J Comput Biol. 2021. PMID: 34125600

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Optical sensors for determination of biogenic amines in food.

Danchuk AI, Komova NS, Mobarez SN, Doronin SY, Burmistrova NA, Markin AV, Duerkop A. Danchuk AI, et al. Among authors: markin av. Anal Bioanal Chem. 2020 Jul;412(17):4023-4036. doi: 10.1007/s00216-020-02675-9. Epub 2020 May 8. Anal Bioanal Chem. 2020. PMID: 32382967 Free PMC article. Review.

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Quartet-Based Inference is Statistically Consistent Under the Unified Duplication-Loss-Coalescence Model.

Markin A, Eulenstein O. Markin A, et al. Bioinformatics. 2021 May 28;37(22):4064-74. doi: 10.1093/bioinformatics/btab414. Online ahead of print. Bioinformatics. 2021. PMID: 34048529 Free PMC article.

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Exact median-tree inference for unrooted reconciliation costs.

Górecki P, Markin A, Eulenstein O. Górecki P, et al. Among authors: markin a. BMC Evol Biol. 2020 Oct 28;20(Suppl 1):136. doi: 10.1186/s12862-020-01700-w. BMC Evol Biol. 2020. PMID: 33115401 Free PMC article.

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Cophenetic Median Trees.

Markin A, Eulenstein O. Markin A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct;16(5):1459-1470. doi: 10.1109/TCBB.2018.2870173. Epub 2018 Sep 13. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 30222583

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Efficient Local Search for Euclidean Path-Difference Median Trees.

Markin A, Eulenstein O. Markin A, et al. IEEE/ACM Trans Comput Biol Bioinform. 2019 Jul-Aug;16(4):1374-1385. doi: 10.1109/TCBB.2017.2763137. Epub 2017 Oct 16. IEEE/ACM Trans Comput Biol Bioinform. 2019. PMID: 29035224

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Liquid-liquid extraction-assisted SERS-based determination of sulfamethoxazole in spiked human urine.

Markina NE, Markin AV, Weber K, Popp J, Cialla-May D. Markina NE, et al. Among authors: markin av. Anal Chim Acta. 2020 May 1;1109:61-68. doi: 10.1016/j.aca.2020.02.067. Epub 2020 Mar 4. Anal Chim Acta. 2020. PMID: 32252906

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Determination of methotrexate in spiked human urine using SERS-active sorbent.

Markina NE, Zakharevich AM, Markin AV. Markina NE, et al. Among authors: markin av. Anal Bioanal Chem. 2020 Nov;412(28):7757-7766. doi: 10.1007/s00216-020-02932-x. Epub 2020 Sep 8. Anal Bioanal Chem. 2020. PMID: 32901306

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Cyclodextrin-assisted surface-enhanced Raman spectroscopy: a critical review.

Markina NE, Cialla-May D, Markin AV. Markina NE, et al. Among authors: markin av. Anal Bioanal Chem. 2022 Jan;414(2):923-942. doi: 10.1007/s00216-021-03704-x. Epub 2021 Oct 11. Anal Bioanal Chem. 2022. PMID: 34635933 Free PMC article. Review.

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octoFLUshow: an Interactive Tool Describing Spatial and Temporal Trends in the Genetic Diversity of Influenza A Virus in U.S. Swine.

Arendsee ZW, Chang J, Hufnagel DE, Markin A, Janas-Martindale A, Vincent AL, Anderson TK. Arendsee ZW, et al. Among authors: markin a. Microbiol Resour Announc. 2021 Dec 16;10(50):e0108121. doi: 10.1128/MRA.01081-21. Epub 2021 Dec 16. Microbiol Resour Announc. 2021. PMID: 34913720 Free PMC article.

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