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1,160 results

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The following term was not found in PubMed: Elmanadely
Page 1
Using DeepContact with Amira graphical user interface.
Liu L, Wu H, Yang S, Yi K, Hu J, Xiao L, Xu T. Liu L, et al. STAR Protoc. 2023 Dec 15;4(4):102558. doi: 10.1016/j.xpro.2023.102558. Epub 2023 Sep 16. STAR Protoc. 2023. PMID: 37717213 Free PMC article.
This protocol will guide users through incorporating available DeepContact models in Amira's artificial intelligence module, thereby allowing invoking of DeepContact functions in organelle segmentation and quantifying of MCS with a user-friendly graphical user interface of …
This protocol will guide users through incorporating available DeepContact models in Amira's artificial intelligence module, thereby …
Protocols for Generating Surfaces and Measuring 3D Organelle Morphology Using Amira.
Garza-Lopez E, Vue Z, Katti P, Neikirk K, Biete M, Lam J, Beasley HK, Marshall AG, Rodman TA, Christensen TA, Salisbury JL, Vang L, Mungai M, AshShareef S, Murray SA, Shao J, Streeter J, Glancy B, Pereira RO, Abel ED, Hinton A Jr. Garza-Lopez E, et al. Cells. 2021 Dec 27;11(1):65. doi: 10.3390/cells11010065. Cells. 2021. PMID: 35011629 Free PMC article.
Here, we describe a standardized protocol using the visualization software, Amira, to quantify organelle morphologies in 3D, thereby providing accurate and reproducible measurements of these cellular substructures. We demonstrate applications of SBF-SEM and Amira to …
Here, we describe a standardized protocol using the visualization software, Amira, to quantify organelle morphologies in 3D, thereby …
The segmentation of microtubules in electron tomograms using Amira.
Redemann S, Weber B, Möller M, Verbavatz JM, Hyman AA, Baum D, Prohaska S, Müller-Reichert T. Redemann S, et al. Methods Mol Biol. 2014;1136:261-78. doi: 10.1007/978-1-4939-0329-0_12. Methods Mol Biol. 2014. PMID: 24633801
This approach, integrated in the visualization and data analysis software Amira, is applicable to tomographic data sets from other model systems....
This approach, integrated in the visualization and data analysis software Amira, is applicable to tomographic data sets from other mo …
Step-by-step guide to post-acquisition correlation of confocal and FIB/SEM volumes using Amira software.
Weiner A. Weiner A. Methods Cell Biol. 2021;162:333-351. doi: 10.1016/bs.mcb.2020.09.006. Epub 2020 Nov 10. Methods Cell Biol. 2021. PMID: 33707018
Here we provide a step-by-step guide to image processing and manual correlation using ImageJ and Amira software of a confocal microscopy stack and a focused ion beam/scanning electron microscopy (FIB/SEM) tomogram acquired using a correlative pipeline. ...
Here we provide a step-by-step guide to image processing and manual correlation using ImageJ and Amira software of a confocal microsc …
Preoperative 3D Image Evaluation of EC-IC Bypass by 3D Visualization Analysis Software Amira().
Tanaka R, Liew BS, Yamada Y, Okubo M, Katayama T, Sasaki K, Miyatani K, Komatsu F, Kato Y, Hirose Y. Tanaka R, et al. Neurol India. 2022 May-Jun;70(3):943-947. doi: 10.4103/0028-3886.349625. Neurol India. 2022. PMID: 35864622 Free article.
MATERIALS AND METHODS: We performed the preoperative evaluation of the possibility of performing an anastomosis between the superficial temporal artery and the middle cerebral artery (STA-MCA) bypass by synthesizing images of computerized tomography (CT), magnetic resonance imagi …
MATERIALS AND METHODS: We performed the preoperative evaluation of the possibility of performing an anastomosis between the superficial temp …
GAZA, 2014.
Tognoni G. Tognoni G. Assist Inferm Ric. 2014 Jul-Sep;33(3):155-9. doi: 10.1702/1648.18036. Assist Inferm Ric. 2014. PMID: 25343418 Italian.
The articles of a woman, journalist, Judish, Amira Hass, are reported. She tells of the astonishment and the horror, of the politics and its' responsibilities, but also of names, faces and stories....
The articles of a woman, journalist, Judish, Amira Hass, are reported. She tells of the astonishment and the horror, of the politics …
Correction: Garza-Lopez et al. Protocols for Generating Surfaces and Measuring 3D Organelle Morphology Using Amira. Cells 2022, 11, 65.
Garza-Lopez E, Vue Z, Katti P, Neikirk K, Biete M, Lam J, Beasley HK, Marshall AG, Rodman TA, Christensen TA, Salisbury JL, Vang L, Mungai M, AshShareef S, Murray SA, Shao J, Streeter J, Glancy B, Pereira RO, Abel ED, Hinton A Jr. Garza-Lopez E, et al. Cells. 2023 May 10;12(10):1356. doi: 10.3390/cells12101356. Cells. 2023. PMID: 37408281 Free PMC article.
Transcriptome profiling of raspberry (Rubus idaeus Var. Amira) in response to infection by tomato ringspot virus (ToRSV).
González G, Aguilera F, D'Afonseca V. González G, et al. Heliyon. 2020 Aug 10;6(8):e04518. doi: 10.1016/j.heliyon.2020.e04518. eCollection 2020 Aug. Heliyon. 2020. PMID: 32817888 Free PMC article.
Here, we characterize the transcriptome of the Rubus idaeus (Var. Amira) in order to 1) provide clues in the transcriptional changes of R. idaeus against tomato ringspot virus (ToRSV); and 2) generate genomic resources for this economically important species. ...
Here, we characterize the transcriptome of the Rubus idaeus (Var. Amira) in order to 1) provide clues in the transcriptional changes …
Two-photon microscopy: visualization of kidney dynamics.
Ashworth SL, Sandoval RM, Tanner GA, Molitoris BA. Ashworth SL, et al. Kidney Int. 2007 Aug;72(4):416-21. doi: 10.1038/sj.ki.5002315. Epub 2007 May 30. Kidney Int. 2007. PMID: 17538570 Free article. Review.
Optical sections of images acquired with the two-photon microscope can be 3-D reconstructed and quantified with Metamorph, Voxx, and Amira software programs....
Optical sections of images acquired with the two-photon microscope can be 3-D reconstructed and quantified with Metamorph, Voxx, and Amir …
1,160 results