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A Path-Deformation Framework for Determining Weighted Genome Rearrangement Distance.

Bhatia S, Egri-Nagy A, Serdoz S, Praeger CE, Gebhardt V, Francis A. Bhatia S, et al. Among authors: egri nagy a. Front Genet. 2020 Sep 24;11:1035. doi: 10.3389/fgene.2020.01035. eCollection 2020. Front Genet. 2020. PMID: 33193592 Free PMC article.

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Maximum likelihood estimates of pairwise rearrangement distances.

Serdoz S, Egri-Nagy A, Sumner J, Holland BR, Jarvis PD, Tanaka MM, Francis AR. Serdoz S, et al. Among authors: egri nagy a. J Theor Biol. 2017 Jun 21;423:31-40. doi: 10.1016/j.jtbi.2017.04.015. Epub 2017 Apr 20. J Theor Biol. 2017. PMID: 28435014

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Information processing in cells and tissues (IPCAT'2009): from small scale dynamics to understanding systems behavior.

Egri-Nagy A, Galliot B, Naef F, Nehaniv CL. Egri-Nagy A, et al. Biosystems. 2010 Oct;102(1):1-2. doi: 10.1016/j.biosystems.2010.07.015. Epub 2010 Aug 17. Biosystems. 2010. PMID: 20723577 No abstract available.

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Group-theoretic models of the inversion process in bacterial genomes.

Egri-Nagy A, Gebhardt V, Tanaka MM, Francis AR. Egri-Nagy A, et al. J Math Biol. 2014 Jul;69(1):243-65. doi: 10.1007/s00285-013-0702-6. Epub 2013 Jun 23. J Math Biol. 2014. PMID: 23793228

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Algebraic properties of automata associated to Petri nets and applications to computation in biological systems.

Egri-Nagy A, Nehaniv CL. Egri-Nagy A, et al. Biosystems. 2008 Oct-Nov;94(1-2):135-44. doi: 10.1016/j.biosystems.2008.05.019. Epub 2008 Jun 20. Biosystems. 2008. PMID: 18611428

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Automatic analysis of computation in biochemical reactions.

Egri-Nagy A, Nehaniv CL, Rhodes JL, Schilstra MJ. Egri-Nagy A, et al. Biosystems. 2008 Oct-Nov;94(1-2):126-34. doi: 10.1016/j.biosystems.2008.05.018. Epub 2008 Jun 20. Biosystems. 2008. PMID: 18606208

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Algebraic double cut and join : A group-theoretic approach to the operator on multichromosomal genomes.

Bhatia S, Egri-Nagy A, Francis AR. Bhatia S, et al. Among authors: egri nagy a. J Math Biol. 2015 Nov;71(5):1149-78. doi: 10.1007/s00285-014-0852-1. Epub 2014 Dec 11. J Math Biol. 2015. PMID: 25502846

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Hierarchical coordinate systems for understanding complexity and its evolution, with applications to genetic regulatory networks.

Egri-Nagy A, Nehaniv CL. Egri-Nagy A, et al. Artif Life. 2008 Summer;14(3):299-312. doi: 10.1162/artl.2008.14.3.14305. Artif Life. 2008. PMID: 18489252

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Symmetry structure in discrete models of biochemical systems: natural subsystems and the weak control hierarchy in a new model of computation driven by interactions.

Nehaniv CL, Rhodes J, Egri-Nagy A, Dini P, Morris ER, Horváth G, Karimi F, Schreckling D, Schilstra MJ. Nehaniv CL, et al. Among authors: egri nagy a. Philos Trans A Math Phys Eng Sci. 2015 Jul 28;373(2046):20140223. doi: 10.1098/rsta.2014.0223. Philos Trans A Math Phys Eng Sci. 2015. PMID: 26078349 Free article.

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Exploring the concept of interaction computing through the discrete algebraic analysis of the Belousov-Zhabotinsky reaction.

Dini P, Nehaniv CL, Egri-Nagy A, Schilstra MJ. Dini P, et al. Among authors: egri nagy a. Biosystems. 2013 May;112(2):145-62. doi: 10.1016/j.biosystems.2013.03.003. Epub 2013 Mar 13. Biosystems. 2013. PMID: 23499885 Free article.

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