Chandran Nithin - Search Results

Year	Number of Results
2015	3
2016	2
2017	2
2018	3
2019	5
2020	2
2021	1

1

Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements.

Manfredonia I, Nithin C, Ponce-Salvatierra A, Ghosh P, Wirecki TK, Marinus T, Ogando NS, Snijder EJ, van Hemert MJ, Bujnicki JM, Incarnato D. Manfredonia I, et al. Among authors: nithin c. Nucleic Acids Res. 2020 Dec 16;48(22):12436-12452. doi: 10.1093/nar/gkaa1053. Nucleic Acids Res. 2020. PMID: 33166999 Free PMC article.

2

Computational modeling of RNA 3D structure based on experimental data.

Ponce-Salvatierra A, Astha, Merdas K, Nithin C, Ghosh P, Mukherjee S, Bujnicki JM. Ponce-Salvatierra A, et al. Among authors: nithin c. Biosci Rep. 2019 Feb 8;39(2):BSR20180430. doi: 10.1042/BSR20180430. Print 2019 Feb 28. Biosci Rep. 2019. PMID: 30670629 Free PMC article. Review.

3

Modeling of Three-Dimensional RNA Structures Using SimRNA.

Wirecki TK, Nithin C, Mukherjee S, Bujnicki JM, Boniecki MJ. Wirecki TK, et al. Among authors: nithin c. Methods Mol Biol. 2020;2165:103-125. doi: 10.1007/978-1-0716-0708-4_6. Methods Mol Biol. 2020. PMID: 32621221

4

QRNAS: software tool for refinement of nucleic acid structures.

Stasiewicz J, Mukherjee S, Nithin C, Bujnicki JM. Stasiewicz J, et al. Among authors: nithin c. BMC Struct Biol. 2019 Mar 21;19(1):5. doi: 10.1186/s12900-019-0103-1. BMC Struct Biol. 2019. PMID: 30898165 Free PMC article.

5

A structure-based model for the prediction of protein-RNA binding affinity.

Nithin C, Mukherjee S, Bahadur RP. Nithin C, et al. RNA. 2019 Dec;25(12):1628-1645. doi: 10.1261/rna.071779.119. Epub 2019 Aug 8. RNA. 2019. PMID: 31395671 Free PMC article.

6

Bioinformatics Tools and Benchmarks for Computational Docking and 3D Structure Prediction of RNA-Protein Complexes.

Nithin C, Ghosh P, Bujnicki JM. Nithin C, et al. Genes (Basel). 2018 Aug 25;9(9):432. doi: 10.3390/genes9090432. Genes (Basel). 2018. PMID: 30149645 Free PMC article. Review.

7

Targeting Non-Coding RNAs in Plants with the CRISPR-Cas Technology is a Challenge yet Worth Accepting.

Basak J, Nithin C. Basak J, et al. Among authors: nithin c. Front Plant Sci. 2015 Nov 19;6:1001. doi: 10.3389/fpls.2015.01001. eCollection 2015. Front Plant Sci. 2015. PMID: 26635829 Free PMC article. Review.

8

Genome-wide identification of miRNAs and lncRNAs in Cajanus cajan.

Nithin C, Thomas A, Basak J, Bahadur RP. Nithin C, et al. BMC Genomics. 2017 Nov 15;18(1):878. doi: 10.1186/s12864-017-4232-2. BMC Genomics. 2017. PMID: 29141604 Free PMC article.

9

A non-redundant protein-RNA docking benchmark version 2.0.

Nithin C, Mukherjee S, Bahadur RP. Nithin C, et al. Proteins. 2017 Feb;85(2):256-267. doi: 10.1002/prot.25211. Epub 2016 Dec 2. Proteins. 2017. PMID: 27862282

10

Probing binding hot spots at protein-RNA recognition sites.

Barik A, Nithin C, Karampudi NB, Mukherjee S, Bahadur RP. Barik A, et al. Among authors: nithin c. Nucleic Acids Res. 2016 Jan 29;44(2):e9. doi: 10.1093/nar/gkv876. Epub 2015 Sep 13. Nucleic Acids Res. 2016. PMID: 26365245 Free PMC article.

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