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Integrative structure and functional anatomy of a nuclear pore complex.

Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP. Kim SJ, et al. Among authors: chemmama ie. Nature. 2018 Mar 22;555(7697):475-482. doi: 10.1038/nature26003. Epub 2018 Mar 14. Nature. 2018. PMID: 29539637 Free PMC article.

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Integrative structure and function of the yeast exocyst complex.

Ganesan SJ, Feyder MJ, Chemmama IE, Fang F, Rout MP, Chait BT, Shi Y, Munson M, Sali A. Ganesan SJ, et al. Among authors: chemmama ie. Protein Sci. 2020 Jun;29(6):1486-1501. doi: 10.1002/pro.3863. Epub 2020 May 1. Protein Sci. 2020. PMID: 32239688 Free PMC article.

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Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure.

Saltzberg DJ, Viswanath S, Echeverria I, Chemmama IE, Webb B, Sali A. Saltzberg DJ, et al. Among authors: chemmama ie. Protein Sci. 2021 Jan;30(1):250-261. doi: 10.1002/pro.3995. Epub 2020 Dec 3. Protein Sci. 2021. PMID: 33166013 Free PMC article.

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Pairwise amino acid secondary structural propensities.

Chemmama IE, Chapagain PP, Gerstman BS. Chemmama IE, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Apr;91(4):042709. doi: 10.1103/PhysRevE.91.042709. Epub 2015 Apr 15. Phys Rev E Stat Nonlin Soft Matter Phys. 2015. PMID: 25974529

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Protein interaction landscapes revealed by advanced in vivo cross-linking-mass spectrometry.

Wheat A, Yu C, Wang X, Burke AM, Chemmama IE, Kaake RM, Baker P, Rychnovsky SD, Yang J, Huang L. Wheat A, et al. Among authors: chemmama ie. Proc Natl Acad Sci U S A. 2021 Aug 10;118(32):e2023360118. doi: 10.1073/pnas.2023360118. Proc Natl Acad Sci U S A. 2021. PMID: 34349018

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Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling.

Gutierrez C, Chemmama IE, Mao H, Yu C, Echeverria I, Block SA, Rychnovsky SD, Zheng N, Sali A, Huang L. Gutierrez C, et al. Among authors: chemmama ie. Proc Natl Acad Sci U S A. 2020 Feb 25;117(8):4088-4098. doi: 10.1073/pnas.1915542117. Epub 2020 Feb 7. Proc Natl Acad Sci U S A. 2020. PMID: 32034103 Free PMC article.

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Reconstruction of 3D structures of MET antibodies from electron microscopy 2D class averages.

Chen Q, Vieth M, Timm DE, Humblet C, Schneidman-Duhovny D, Chemmama IE, Sali A, Zeng W, Lu J, Liu L. Chen Q, et al. Among authors: chemmama ie. PLoS One. 2017 Apr 13;12(4):e0175758. doi: 10.1371/journal.pone.0175758. eCollection 2017. PLoS One. 2017. PMID: 28406969 Free PMC article.

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Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex.

Upla P, Kim SJ, Sampathkumar P, Dutta K, Cahill SM, Chemmama IE, Williams R, Bonanno JB, Rice WJ, Stokes DL, Cowburn D, Almo SC, Sali A, Rout MP, Fernandez-Martinez J. Upla P, et al. Among authors: chemmama ie. Structure. 2017 Mar 7;25(3):434-445. doi: 10.1016/j.str.2017.01.006. Epub 2017 Feb 2. Structure. 2017. PMID: 28162953 Free PMC article.

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Structure and Function of the Nuclear Pore Complex Cytoplasmic mRNA Export Platform.

Fernandez-Martinez J, Kim SJ, Shi Y, Upla P, Pellarin R, Gagnon M, Chemmama IE, Wang J, Nudelman I, Zhang W, Williams R, Rice WJ, Stokes DL, Zenklusen D, Chait BT, Sali A, Rout MP. Fernandez-Martinez J, et al. Among authors: chemmama ie. Cell. 2016 Nov 17;167(5):1215-1228.e25. doi: 10.1016/j.cell.2016.10.028. Epub 2016 Nov 10. Cell. 2016. PMID: 27839866 Free PMC article.

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Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures.

Viswanath S, Chemmama IE, Cimermancic P, Sali A. Viswanath S, et al. Among authors: chemmama ie. Biophys J. 2017 Dec 5;113(11):2344-2353. doi: 10.1016/j.bpj.2017.10.005. Biophys J. 2017. PMID: 29211988 Free PMC article.

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