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Year Number of Results
1988 1
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1998 1
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2004 63
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2006 74
2007 62
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2009 65
2010 80
2011 110
2012 100
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2,080 results

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Page 1
De novo design of protein structure and function with RFdiffusion.
Watson JL, Juergens D, Bennett NR, Trippe BL, Yim J, Eisenach HE, Ahern W, Borst AJ, Ragotte RJ, Milles LF, Wicky BIM, Hanikel N, Pellock SJ, Courbet A, Sheffler W, Wang J, Venkatesh P, Sappington I, Torres SV, Lauko A, De Bortoli V, Mathieu E, Ovchinnikov S, Barzilay R, Jaakkola TS, DiMaio F, Baek M, Baker D. Watson JL, et al. Among authors: baker d. Nature. 2023 Aug;620(7976):1089-1100. doi: 10.1038/s41586-023-06415-8. Epub 2023 Jul 11. Nature. 2023. PMID: 37433327 Free PMC article.
Preface.
Baker DC. Baker DC. Adv Carbohydr Chem Biochem. 2023;84:ix. doi: 10.1016/S0065-2318(23)00027-6. Adv Carbohydr Chem Biochem. 2023. PMID: 37979979 No abstract available.
Predicting protein-protein interactions in the human proteome.
Zhang J, Humphreys IR, Pei J, Kim J, Choi C, Yuan R, Durham J, Liu S, Choi HJ, Baek M, Baker D, Cong Q. Zhang J, et al. Among authors: baker d. Science. 2025 Oct 23;390(6771):eadt1630. doi: 10.1126/science.adt1630. Epub 2025 Oct 23. Science. 2025. PMID: 40997207 Free PMC article.
Design of high-specificity binders for peptide-MHC-I complexes.
Liu B, Greenwood NF, Bonzanini JE, Motmaen A, Meyerberg J, Dao T, Xiang X, Ault R, Sharp J, Wang C, Visani GM, Vafeados DK, Roullier N, Nourmohammad A, Scheinberg DA, Garcia KC, Baker D. Liu B, et al. Among authors: baker d. Science. 2025 Jul 24;389(6758):386-391. doi: 10.1126/science.adv0185. Epub 2025 Jul 24. Science. 2025. PMID: 40705892 Free PMC article.
Improving Protein Expression, Stability, and Function with ProteinMPNN.
Sumida KH, Núñez-Franco R, Kalvet I, Pellock SJ, Wicky BIM, Milles LF, Dauparas J, Wang J, Kipnis Y, Jameson N, Kang A, De La Cruz J, Sankaran B, Bera AK, Jiménez-Osés G, Baker D. Sumida KH, et al. Among authors: baker d. J Am Chem Soc. 2024 Jan 24;146(3):2054-2061. doi: 10.1021/jacs.3c10941. Epub 2024 Jan 9. J Am Chem Soc. 2024. PMID: 38194293 Free PMC article.
Generalized biomolecular modeling and design with RoseTTAFold All-Atom.
Krishna R, Wang J, Ahern W, Sturmfels P, Venkatesh P, Kalvet I, Lee GR, Morey-Burrows FS, Anishchenko I, Humphreys IR, McHugh R, Vafeados D, Li X, Sutherland GA, Hitchcock A, Hunter CN, Kang A, Brackenbrough E, Bera AK, Baek M, DiMaio F, Baker D. Krishna R, et al. Among authors: baker d. Science. 2024 Apr 19;384(6693):eadl2528. doi: 10.1126/science.adl2528. Epub 2024 Apr 19. Science. 2024. PMID: 38452047 Free article.
Design of intrinsically disordered region binding proteins.
Wu K, Jiang H, Hicks DR, Liu C, Muratspahić E, Ramelot TA, Liu Y, McNally K, Kenny S, Mihut A, Gaur A, Coventry B, Chen W, Bera AK, Kang A, Gerben S, Lamb MY, Murray A, Li X, Kennedy MA, Yang W, Song Z, Schober G, Brierley SM, O'Neill J, Gelb MH, Montelione GT, Derivery E, Baker D. Wu K, et al. Among authors: baker d. Science. 2025 Jul 17;389(6757):eadr8063. doi: 10.1126/science.adr8063. Epub 2025 Jul 17. Science. 2025. PMID: 40674483 Free PMC article.
Design of intrinsically disordered region binding proteins.
Wu K, Jiang H, Hicks DR, Liu C, Muratspahić E, Ramelot TA, Liu Y, McNally K, Kenny S, Mihut A, Gaur A, Coventry B, Chen W, Bera AK, Kang A, Gerben S, Lamb MY, Murray A, Li X, Kennedy MA, Yang W, Song Z, Schober G, Brierley SM, O'Neill J, Gelb MH, Montelione GT, Derivery E, Baker D. Wu K, et al. Among authors: baker d. bioRxiv [Preprint]. 2025 Feb 8:2024.07.15.603480. doi: 10.1101/2024.07.15.603480. bioRxiv. 2025. Update in: Science. 2025 Jul 17;389(6757):eadr8063. doi: 10.1126/science.adr8063. PMID: 39071356 Free PMC article. Updated. Preprint.
Computational design of sequence-specific DNA-binding proteins.
Glasscock CJ, Pecoraro R, McHugh R, Doyle LA, Chen W, Boivin O, Lonnquist B, Na E, Politanska Y, Haddox HK, Cox D, Norn C, Coventry B, Goreshnik I, Vafeados D, Lee GR, Gordan R, Stoddard BL, DiMaio F, Baker D. Glasscock CJ, et al. Among authors: baker d. bioRxiv [Preprint]. 2023 Sep 21:2023.09.20.558720. doi: 10.1101/2023.09.20.558720. bioRxiv. 2023. Update in: Nat Struct Mol Biol. 2025 Nov;32(11):2252-2261. doi: 10.1038/s41594-025-01669-4. PMID: 37790440 Free PMC article. Updated. Preprint.
2,080 results