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Genome-resolved metagenomics reveals role of iron metabolism in drought-induced rhizosphere microbiome dynamics.

Xu L, Dong Z, Chiniquy D, Pierroz G, Deng S, Gao C, Diamond S, Simmons T, Wipf HM, Caddell D, Varoquaux N, Madera MA, Hutmacher R, Deutschbauer A, Dahlberg JA, Guerinot ML, Purdom E, Banfield JF, Taylor JW, Lemaux PG, Coleman-Derr D. Xu L, et al. Among authors: chiniquy d. Nat Commun. 2021 May 28;12(1):3209. doi: 10.1038/s41467-021-23553-7. Nat Commun. 2021. PMID: 34050180 Free PMC article.

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Microfabrication of a Chamber for High-Resolution, In Situ Imaging of the Whole Root for Plant-Microbe Interactions.

Jabusch LK, Kim PW, Chiniquy D, Zhao Z, Wang B, Bowen B, Kang AJ, Yoshikuni Y, Deutschbauer AM, Singh AK, Northen TR. Jabusch LK, et al. Among authors: chiniquy d. Int J Mol Sci. 2021 Jul 23;22(15):7880. doi: 10.3390/ijms22157880. Int J Mol Sci. 2021. PMID: 34360661 Free PMC article.

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Feature selection and causal analysis for microbiome studies in the presence of confounding using standardization.

Goren E, Wang C, He Z, Sheflin AM, Chiniquy D, Prenni JE, Tringe S, Schachtman DP, Liu P. Goren E, et al. Among authors: chiniquy d. BMC Bioinformatics. 2021 Jul 6;22(1):362. doi: 10.1186/s12859-021-04232-2. BMC Bioinformatics. 2021. PMID: 34229628 Free PMC article.

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CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant-Microbe Interactions.

Wang B, Zhao Z, Jabusch LK, Chiniquy DM, Ono K, Conway JM, Zhang Z, Wang G, Robinson D, Cheng JF, Dangl JL, Northen TR, Yoshikuni Y. Wang B, et al. Among authors: chiniquy dm. ACS Synth Biol. 2020 Sep 18;9(9):2610-2615. doi: 10.1021/acssynbio.0c00280. Epub 2020 Aug 13. ACS Synth Biol. 2020. PMID: 32786359 Free article.

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Microbial Community Field Surveys Reveal Abundant Pseudomonas Population in Sorghum Rhizosphere Composed of Many Closely Related Phylotypes.

Chiniquy D, Barnes EM, Zhou J, Hartman K, Li X, Sheflin A, Pella A, Marsh E, Prenni J, Deutschbauer AM, Schachtman DP, Tringe SG. Chiniquy D, et al. Front Microbiol. 2021 Mar 9;12:598180. doi: 10.3389/fmicb.2021.598180. eCollection 2021. Front Microbiol. 2021. PMID: 33767674 Free PMC article.

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PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens.

Chiniquy D, Underwood W, Corwin J, Ryan A, Szemenyei H, Lim CC, Stonebloom SH, Birdseye DS, Vogel J, Kliebenstein D, Scheller HV, Somerville S. Chiniquy D, et al. Plant J. 2019 Dec;100(5):1022-1035. doi: 10.1111/tpj.14497. Epub 2019 Oct 12. Plant J. 2019. PMID: 31411777 Free article.

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Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis.

Sheflin AM, Chiniquy D, Yuan C, Goren E, Kumar I, Braud M, Brutnell T, Eveland AL, Tringe S, Liu P, Kresovich S, Marsh EL, Schachtman DP, Prenni JE. Sheflin AM, et al. Among authors: chiniquy d. Plant Direct. 2019 Mar 14;3(3):e00122. doi: 10.1002/pld3.122. eCollection 2019 Mar. Plant Direct. 2019. PMID: 31245765 Free PMC article.

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Cell Wall Composition and Candidate Biosynthesis Gene Expression During Rice Development.

Lin F, Manisseri C, Fagerström A, Peck ML, Vega-Sánchez ME, Williams B, Chiniquy DM, Saha P, Pattathil S, Conlin B, Zhu L, Hahn MG, Willats WG, Scheller HV, Ronald PC, Bartley LE. Lin F, et al. Among authors: chiniquy dm. Plant Cell Physiol. 2016 Oct;57(10):2058-2075. doi: 10.1093/pcp/pcw125. Epub 2016 Aug 1. Plant Cell Physiol. 2016. PMID: 27481893

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ParA resolvase catalyzes site-specific excision of DNA from the Arabidopsis genome.

Thomson JG, Yau YY, Blanvillain R, Nunes WM, Chiniquy D, Thilmony R, Ow DW. Thomson JG, et al. Among authors: chiniquy d. Transgenic Res. 2009 Apr;18(2):237-48. doi: 10.1007/s11248-008-9213-4. Epub 2008 Aug 14. Transgenic Res. 2009. PMID: 18704739

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Inactivation of OsIRX10 leads to decreased xylan content in rice culm cell walls and improved biomass saccharification.

Chen X, Vega-Sánchez ME, Verhertbruggen Y, Chiniquy D, Canlas PE, Fagerström A, Prak L, Christensen U, Oikawa A, Chern M, Zuo S, Lin F, Auer M, Willats WG, Bartley L, Harholt J, Scheller HV, Ronald PC. Chen X, et al. Among authors: chiniquy d. Mol Plant. 2013 Mar;6(2):570-3. doi: 10.1093/mp/sss135. Epub 2012 Nov 23. Mol Plant. 2013. PMID: 23180670 Free article. No abstract available.

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