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PLIC: protein-ligand interaction clusters.

Anand P, Nagarajan D, Mukherjee S, Chandra N. Anand P, et al. Among authors: nagarajan d. Database (Oxford). 2014 Apr 23;2014(0):bau029. doi: 10.1093/database/bau029. Print 2014. Database (Oxford). 2014. PMID: 24763918 Free PMC article.

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Development and Characterization of a Potent Tumor Necrosis Factor-Alpha-Blocking Agent.

Jameei A, Nagarajan D, Sarikhani M, Chandra N, Karande AA. Jameei A, et al. Among authors: nagarajan d. Monoclon Antib Immunodiagn Immunother. 2019 Aug;38(4):145-156. doi: 10.1089/mab.2019.0018. Epub 2019 Jul 15. Monoclon Antib Immunodiagn Immunother. 2019. PMID: 31305212 Free PMC article.

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Design of a heme-binding peptide motif adopting a β-hairpin conformation.

Nagarajan D, Sukumaran S, Deka G, Krishnamurthy K, Atreya HS, Chandra N. Nagarajan D, et al. J Biol Chem. 2018 Jun 15;293(24):9412-9422. doi: 10.1074/jbc.RA118.001768. Epub 2018 Apr 25. J Biol Chem. 2018. PMID: 29695501 Free PMC article.

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N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori.

Kumar S, Karmakar BC, Nagarajan D, Mukhopadhyay AK, Morgan RD, Rao DN. Kumar S, et al. Among authors: nagarajan d. Nucleic Acids Res. 2018 Apr 20;46(7):3815. doi: 10.1093/nar/gky195. Nucleic Acids Res. 2018. PMID: 29538771 Free PMC article. No abstract available.

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Ω76: A designed antimicrobial peptide to combat carbapenem- and tigecycline-resistant Acinetobacter baumannii.

Nagarajan D, Roy N, Kulkarni O, Nanajkar N, Datey A, Ravichandran S, Thakur C, T S, Aprameya IV, Sarma SP, Chakravortty D, Chandra N. Nagarajan D, et al. Sci Adv. 2019 Jul 24;5(7):eaax1946. doi: 10.1126/sciadv.aax1946. eCollection 2019 Jul. Sci Adv. 2019. PMID: 31355341 Free PMC article.

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Computational antimicrobial peptide design and evaluation against multidrug-resistant clinical isolates of bacteria.

Nagarajan D, Nagarajan T, Roy N, Kulkarni O, Ravichandran S, Mishra M, Chakravortty D, Chandra N. Nagarajan D, et al. J Biol Chem. 2018 Mar 9;293(10):3492-3509. doi: 10.1074/jbc.M117.805499. Epub 2017 Dec 19. J Biol Chem. 2018. PMID: 29259134 Free PMC article.

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N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori.

Kumar S, Karmakar BC, Nagarajan D, Mukhopadhyay AK, Morgan RD, Rao DN. Kumar S, et al. Among authors: nagarajan d. Nucleic Acids Res. 2018 Apr 20;46(7):3429-3445. doi: 10.1093/nar/gky126. Nucleic Acids Res. 2018. PMID: 29481677 Free PMC article.

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A new blood-based RNA signature (R₉), for monitoring effectiveness of tuberculosis treatment in a South Indian longitudinal cohort.

Thakur C, Tripathi A, Ravichandran S, Shivananjaiah A, Chakraborty A, Varadappa S, Chikkavenkatappa N, Nagarajan D, Lakshminarasimhaiah S, Singh A, Chandra N. Thakur C, et al. Among authors: nagarajan d. iScience. 2022 Jan 10;25(2):103745. doi: 10.1016/j.isci.2022.103745. eCollection 2022 Feb 18. iScience. 2022. PMID: 35118358 Free PMC article.

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ABS-Scan: In silico alanine scanning mutagenesis for binding site residues in protein-ligand complex.

Anand P, Nagarajan D, Mukherjee S, Chandra N. Anand P, et al. Among authors: nagarajan d. F1000Res. 2014 Sep 9;3:214. doi: 10.12688/f1000research.5165.2. eCollection 2014. F1000Res. 2014. PMID: 25685322 Free PMC article.

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Design of symmetric TIM barrel proteins from first principles.

Nagarajan D, Deka G, Rao M. Nagarajan D, et al. BMC Biochem. 2015 Aug 12;16:18. doi: 10.1186/s12858-015-0047-4. BMC Biochem. 2015. PMID: 26264284 Free PMC article.

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