Dinler A. Antunes - Search Results

Year	Number of Results
2010	1
2011	1
2012	1
2013	1
2014	2
2015	4
2017	3
2018	4
2019	3
2020	4
2021	1

1

Computational analysis of complement inhibitor compstatin using molecular dynamics.

Devaurs D, Antunes DA, Kavraki LE. Devaurs D, et al. Among authors: antunes da. J Mol Model. 2020 Aug 12;26(9):231. doi: 10.1007/s00894-020-04472-8. J Mol Model. 2020. PMID: 32789582

2

APE-Gen: A Fast Method for Generating Ensembles of Bound Peptide-MHC Conformations.

Abella JR, Antunes DA, Clementi C, Kavraki LE. Abella JR, et al. Among authors: antunes da. Molecules. 2019 Mar 2;24(5):881. doi: 10.3390/molecules24050881. Molecules. 2019. PMID: 30832312 Free PMC article.

3

Hepatitis E Virus (HEV)-Specific T Cell Receptor Cross-Recognition: Implications for Immunotherapy.

Soon CF, Zhang S, Suneetha PV, Antunes DA, Manns MP, Raha S, Schultze-Florey C, Prinz I, Wedemeyer H, Sällberg Chen M, Cornberg M. Soon CF, et al. Front Immunol. 2019 Sep 4;10:2076. doi: 10.3389/fimmu.2019.02076. eCollection 2019. Front Immunol. 2019. PMID: 31552033 Free PMC article.

4

Using parallelized incremental meta-docking can solve the conformational sampling issue when docking large ligands to proteins.

Devaurs D, Antunes DA, Hall-Swan S, Mitchell N, Moll M, Lizée G, Kavraki LE. Devaurs D, et al. Among authors: antunes da. BMC Mol Cell Biol. 2019 Sep 5;20(1):42. doi: 10.1186/s12860-019-0218-z. BMC Mol Cell Biol. 2019. PMID: 31488048 Free PMC article.

5

Large-Scale Structure-Based Prediction of Stable Peptide Binding to Class I HLAs Using Random Forests.

Abella JR, Antunes DA, Clementi C, Kavraki LE. Abella JR, et al. Among authors: antunes da. Front Immunol. 2020 Jul 22;11:1583. doi: 10.3389/fimmu.2020.01583. eCollection 2020. Front Immunol. 2020. PMID: 32793224 Free PMC article.

6

HLA-Arena: A Customizable Environment for the Structural Modeling and Analysis of Peptide-HLA Complexes for Cancer Immunotherapy.

Antunes DA, Abella JR, Hall-Swan S, Devaurs D, Conev A, Moll M, Lizée G, Kavraki LE. Antunes DA, et al. JCO Clin Cancer Inform. 2020 Jul;4:623-636. doi: 10.1200/CCI.19.00123. JCO Clin Cancer Inform. 2020. PMID: 32667823 Free article.

7

Structural Modeling and Molecular Dynamics of the Immune Checkpoint Molecule HLA-G.

Arns T, Antunes DA, Abella JR, Rigo MM, Kavraki LE, Giuliatti S, Donadi EA. Arns T, et al. Among authors: antunes da. Front Immunol. 2020 Nov 6;11:575076. doi: 10.3389/fimmu.2020.575076. eCollection 2020. Front Immunol. 2020. PMID: 33240264 Free PMC article.

8

Coarse-Grained Conformational Sampling of Protein Structure Improves the Fit to Experimental Hydrogen-Exchange Data.

Devaurs D, Antunes DA, Papanastasiou M, Moll M, Ricklin D, Lambris JD, Kavraki LE. Devaurs D, et al. Among authors: antunes da. Front Mol Biosci. 2017 Mar 10;4:13. doi: 10.3389/fmolb.2017.00013. eCollection 2017. Front Mol Biosci. 2017. PMID: 28344973 Free PMC article.

9

Interpreting T-Cell Cross-reactivity through Structure: Implications for TCR-Based Cancer Immunotherapy.

Antunes DA, Rigo MM, Freitas MV, Mendes MFA, Sinigaglia M, Lizée G, Kavraki LE, Selin LK, Cornberg M, Vieira GF. Antunes DA, et al. Front Immunol. 2017 Oct 4;8:1210. doi: 10.3389/fimmu.2017.01210. eCollection 2017. Front Immunol. 2017. PMID: 29046675 Free PMC article.

10

DINC 2.0: A New Protein-Peptide Docking Webserver Using an Incremental Approach.

Antunes DA, Moll M, Devaurs D, Jackson KR, Lizée G, Kavraki LE. Antunes DA, et al. Cancer Res. 2017 Nov 1;77(21):e55-e57. doi: 10.1158/0008-5472.CAN-17-0511. Cancer Res. 2017. PMID: 29092940 Free PMC article.

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