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A PERTURBATION CELL ATLAS OF HUMAN INDUCED PLURIPOTENT STEM CELLS.
Nourreddine S, Doctor Y, Dailamy A, Forget A, Lee YH, Chinn B, Khaliq H, Polacco B, Muralidharan M, Pan E, Zhang Y, Sigaeva A, Hansen JN, Gao J, Parker JA, Obernier K, Clark T, Chen JY, Metallo C, Lundberg E, Ideker T, Krogan N, Mali P. Nourreddine S, et al. Among authors: doctor y. bioRxiv [Preprint]. 2024 Nov 4:2024.11.03.621734. doi: 10.1101/2024.11.03.621734. bioRxiv. 2024. PMID: 39574586 Free PMC article. Preprint.
Regulatable In Vivo Gene Expression via Adaptamers.
Bryant J, Herron L, Doctor Y, McRae F, Wang J, Hirsch T, Portell A, Kumar S, Mali P. Bryant J, et al. Among authors: doctor y. bioRxiv [Preprint]. 2025 Dec 22:2025.12.21.695777. doi: 10.64898/2025.12.21.695777. bioRxiv. 2025. PMID: 41497668 Free PMC article. Preprint.
A Manual for Genome and Transcriptome Engineering.
Doctor Y, Sanghvi M, Mali P. Doctor Y, et al. IEEE Rev Biomed Eng. 2025;18:250-267. doi: 10.1109/RBME.2024.3494715. Epub 2025 Jan 28. IEEE Rev Biomed Eng. 2025. PMID: 39514364 Free PMC article. Review.
Multiplexed Pan Soluble Ligandome Assaying via OASIS.
Lee YH, Doctor Y, Zhang Y, Kumar S, Rainaldi J, Pan E, Mali P. Lee YH, et al. Among authors: doctor y. bioRxiv [Preprint]. 2025 Dec 23:2025.12.21.695830. doi: 10.64898/2025.12.21.695830. bioRxiv. 2025. PMID: 41497589 Free PMC article. Preprint.
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines.
Clark T, Mohan J, Schaffer L, Obernier K, Al Manir S, Churas CP, Dailamy A, Doctor Y, Forget A, Hansen JN, Hu M, Lenkiewicz J, Levinson MA, Marquez C, Nourreddine S, Niestroy J, Pratt D, Qian G, Thaker S, Bélisle-Pipon JC, Brandt C, Chen J, Ding Y, Fodeh S, Krogan N, Lundberg E, Mali P, Payne-Foster P, Ratcliffe S, Ravitsky V, Sali A, Schulz W, Ideker T. Clark T, et al. Among authors: doctor y. bioRxiv [Preprint]. 2024 May 24:2024.05.21.589311. doi: 10.1101/2024.05.21.589311. bioRxiv. 2024. PMID: 38826258 Free PMC article. Preprint.