Donald Geman - Search Results

Year	Number of Results
2004	2
2005	2
2007	2
2008	2
2009	4
2010	4
2011	3
2012	2
2013	4
2014	4
2015	3
2016	1
2017	1
2018	3
2019	1
2020	2
2021	2
2022	0

1

Tackling the widespread and critical impact of batch effects in high-throughput data.

Leek JT, Scharpf RB, Bravo HC, Simcha D, Langmead B, Johnson WE, Geman D, Baggerly K, Irizarry RA. Leek JT, et al. Among authors: geman d. Nat Rev Genet. 2010 Oct;11(10):733-9. doi: 10.1038/nrg2825. Epub 2010 Sep 14. Nat Rev Genet. 2010. PMID: 20838408 Free PMC article. Review.

2

An R package for divergence analysis of omics data.

Dinalankara W, Ke Q, Geman D, Marchionni L. Dinalankara W, et al. Among authors: geman d. PLoS One. 2021 Apr 5;16(4):e0249002. doi: 10.1371/journal.pone.0249002. eCollection 2021. PLoS One. 2021. PMID: 33819273 Free PMC article.

3

Efficient representations of tumor diversity with paired DNA-RNA aberrations.

Ke Q, Dinalankara W, Younes L, Geman D, Marchionni L. Ke Q, et al. Among authors: geman d. PLoS Comput Biol. 2021 Jun 11;17(6):e1008944. doi: 10.1371/journal.pcbi.1008944. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34115745 Free PMC article.

4

An argument for mechanism-based statistical inference in cancer.

Geman D, Ochs M, Price ND, Tomasetti C, Younes L. Geman D, et al. Hum Genet. 2015 May;134(5):479-95. doi: 10.1007/s00439-014-1501-x. Epub 2014 Nov 9. Hum Genet. 2015. PMID: 25381197 Free PMC article. Review.

5

Identifying Personalized Metabolic Signatures in Breast Cancer.

Baloni P, Dinalankara W, Earls JC, Knijnenburg TA, Geman D, Marchionni L, Price ND. Baloni P, et al. Among authors: geman d. Metabolites. 2020 Dec 30;11(1):20. doi: 10.3390/metabo11010020. Metabolites. 2020. PMID: 33396819 Free PMC article.

6

Revisiting the tumorigenesis timeline with a data-driven generative model.

Lahouel K, Younes L, Danilova L, Giardiello FM, Hruban RH, Groopman J, Kinzler KW, Vogelstein B, Geman D, Tomasetti C. Lahouel K, et al. Among authors: geman d. Proc Natl Acad Sci U S A. 2020 Jan 14;117(2):857-864. doi: 10.1073/pnas.1914589117. Epub 2019 Dec 27. Proc Natl Acad Sci U S A. 2020. PMID: 31882448 Free PMC article.

7

Learning dysregulated pathways in cancers from differential variability analysis.

Afsari B, Geman D, Fertig EJ. Afsari B, et al. Among authors: geman d. Cancer Inform. 2014 Oct 23;13(Suppl 5):61-7. doi: 10.4137/CIN.S14066. eCollection 2014. Cancer Inform. 2014. PMID: 25392694 Free PMC article. Review.

8

Digitizing omics profiles by divergence from a baseline.

Dinalankara W, Ke Q, Xu Y, Ji L, Pagane N, Lien A, Matam T, Fertig EJ, Price ND, Younes L, Marchionni L, Geman D. Dinalankara W, et al. Among authors: geman d. Proc Natl Acad Sci U S A. 2018 May 1;115(18):4545-4552. doi: 10.1073/pnas.1721628115. Epub 2018 Apr 16. Proc Natl Acad Sci U S A. 2018. PMID: 29666255 Free PMC article.

9

Opinion: Science in the age of selfies.

Geman D, Geman S. Geman D, et al. Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9384-7. doi: 10.1073/pnas.1609793113. Proc Natl Acad Sci U S A. 2016. PMID: 27555443 Free PMC article. No abstract available.

10

Relative expression analysis for molecular cancer diagnosis and prognosis.

Eddy JA, Sung J, Geman D, Price ND. Eddy JA, et al. Among authors: geman d. Technol Cancer Res Treat. 2010 Apr;9(2):149-59. doi: 10.1177/153303461000900204. Technol Cancer Res Treat. 2010. PMID: 20218737 Free PMC article. Review.

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