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Page 1
New prediction categories in CASP15.
Kryshtafovych A, Antczak M, Szachniuk M, Zok T, Kretsch RC, Rangan R, Pham P, Das R, Robin X, Studer G, Durairaj J, Eberhardt J, Sweeney A, Topf M, Schwede T, Fidelis K, Moult J. Kryshtafovych A, et al. Among authors: fidelis k. Proteins. 2023 Dec;91(12):1550-1557. doi: 10.1002/prot.26515. Epub 2023 Jun 12. Proteins. 2023. PMID: 37306011 Free PMC article.
Modeling SARS-CoV-2 proteins in the CASP-commons experiment.
Kryshtafovych A, Moult J, Billings WM, Della Corte D, Fidelis K, Kwon S, Olechnovič K, Seok C, Venclovas Č, Won J; CASP-COVID participants. Kryshtafovych A, et al. Among authors: fidelis k. Proteins. 2021 Dec;89(12):1987-1996. doi: 10.1002/prot.26231. Epub 2021 Oct 5. Proteins. 2021. PMID: 34462960 Free PMC article.
Protein structure prediction and model quality assessment.
Kryshtafovych A, Fidelis K. Kryshtafovych A, et al. Among authors: fidelis k. Drug Discov Today. 2009 Apr;14(7-8):386-93. doi: 10.1016/j.drudis.2008.11.010. Epub 2009 Jan 15. Drug Discov Today. 2009. PMID: 19100336 Free PMC article. Review.
Assessment of model accuracy estimations in CASP12.
Kryshtafovych A, Monastyrskyy B, Fidelis K, Schwede T, Tramontano A. Kryshtafovych A, et al. Among authors: fidelis k. Proteins. 2018 Mar;86 Suppl 1(Suppl 1):345-360. doi: 10.1002/prot.25371. Epub 2017 Sep 8. Proteins. 2018. PMID: 28833563 Free PMC article.
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pagès G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A. Fajardo JE, et al. Among authors: fidelis k. Proteins. 2019 Dec;87(12):1283-1297. doi: 10.1002/prot.25816. Epub 2019 Oct 7. Proteins. 2019. PMID: 31569265 Free PMC article.
Target highlights in CASP14: Analysis of models by structure providers.
Alexander LT, Lepore R, Kryshtafovych A, Adamopoulos A, Alahuhta M, Arvin AM, Bomble YJ, Böttcher B, Breyton C, Chiarini V, Chinnam NB, Chiu W, Fidelis K, Grinter R, Gupta GD, Hartmann MD, Hayes CS, Heidebrecht T, Ilari A, Joachimiak A, Kim Y, Linares R, Lovering AL, Lunin VV, Lupas AN, Makbul C, Michalska K, Moult J, Mukherjee PK, Nutt WS, Oliver SL, Perrakis A, Stols L, Tainer JA, Topf M, Tsutakawa SE, Valdivia-Delgado M, Schwede T. Alexander LT, et al. Among authors: fidelis k. Proteins. 2021 Dec;89(12):1647-1672. doi: 10.1002/prot.26247. Epub 2021 Oct 10. Proteins. 2021. PMID: 34561912 Free PMC article.
Protein target highlights in CASP15: Analysis of models by structure providers.
Alexander LT, Durairaj J, Kryshtafovych A, Abriata LA, Bayo Y, Bhabha G, Breyton C, Caulton SG, Chen J, Degroux S, Ekiert DC, Erlandsen BS, Freddolino L, Gilzer D, Greening C, Grimes JM, Grinter R, Gurusaran M, Hartmann MD, Hitchman CJ, Keown JR, Kropp A, Kursula P, Lovering AL, Lemaitre B, Lia A, Liu S, Logotheti M, Lu S, Markússon S, Miller MD, Minasov G, Niemann HH, Opazo F, Phillips GN Jr, Davies OR, Rommelaere S, Rosas-Lemus M, Roversi P, Satchell K, Smith N, Wilson MA, Wu KL, Xia X, Xiao H, Zhang W, Zhou ZH, Fidelis K, Topf M, Moult J, Schwede T. Alexander LT, et al. Among authors: fidelis k. Proteins. 2023 Dec;91(12):1571-1599. doi: 10.1002/prot.26545. Epub 2023 Jul 26. Proteins. 2023. PMID: 37493353 Free PMC article.
Evaluation of disorder predictions in CASP9.
Monastyrskyy B, Fidelis K, Moult J, Tramontano A, Kryshtafovych A. Monastyrskyy B, et al. Among authors: fidelis k. Proteins. 2011;79 Suppl 10(S10):107-18. doi: 10.1002/prot.23161. Epub 2011 Sep 16. Proteins. 2011. PMID: 21928402 Free PMC article.
Assessing the accuracy of contact predictions in CASP13.
Shrestha R, Fajardo E, Gil N, Fidelis K, Kryshtafovych A, Monastyrskyy B, Fiser A. Shrestha R, et al. Among authors: fidelis k. Proteins. 2019 Dec;87(12):1058-1068. doi: 10.1002/prot.25819. Epub 2019 Oct 24. Proteins. 2019. PMID: 31587357 Free PMC article.
90 results