Gennady Verkhivker - Search Results

Year	Number of Results
2002	3
2003	3
2004	2
2005	1
2006	1
2007	4
2008	5
2009	9
2010	2
2011	4
2012	3
2013	3
2014	4
2015	3
2016	4
2017	5
2018	6
2019	8
2020	11
2021	3

1

Editorial: Machine Learning in Biomolecular Simulations.

Verkhivker G, Spiwok V, Gervasio FL. Verkhivker G, et al. Front Mol Biosci. 2019 Aug 29;6:76. doi: 10.3389/fmolb.2019.00076. eCollection 2019. Front Mol Biosci. 2019. PMID: 31555661 Free PMC article. No abstract available.

2

Integrated Computational Approaches and Tools forAllosteric Drug Discovery.

Sheik Amamuddy O, Veldman W, Manyumwa C, Khairallah A, Agajanian S, Oluyemi O, Verkhivker G, Tastan Bishop O. Sheik Amamuddy O, et al. Among authors: verkhivker g. Int J Mol Sci. 2020 Jan 28;21(3):847. doi: 10.3390/ijms21030847. Int J Mol Sci. 2020. PMID: 32013012 Free PMC article. Review.

3

Allosteric Regulation at the Crossroads of New Technologies: Multiscale Modeling, Networks, and Machine Learning.

Verkhivker GM, Agajanian S, Hu G, Tao P. Verkhivker GM, et al. Front Mol Biosci. 2020 Jul 9;7:136. doi: 10.3389/fmolb.2020.00136. eCollection 2020. Front Mol Biosci. 2020. PMID: 32733918 Free PMC article. Review.

4

Interrogating Regulatory Mechanisms in Signaling Proteins by Allosteric Inhibitors and Activators: A Dynamic View Through the Lens of Residue Interaction Networks.

Astl L, Tse A, Verkhivker GM. Astl L, et al. Among authors: verkhivker gm. Adv Exp Med Biol. 2019;1163:187-223. doi: 10.1007/978-981-13-8719-7_9. Adv Exp Med Biol. 2019. PMID: 31707705 Review.

5

Impact of Early Pandemic Stage Mutations on Molecular Dynamics of SARS-CoV-2 M^pro.

Sheik Amamuddy O, Verkhivker GM, Tastan Bishop Ö. Sheik Amamuddy O, et al. Among authors: verkhivker gm. J Chem Inf Model. 2020 Oct 26;60(10):5080-5102. doi: 10.1021/acs.jcim.0c00634. Epub 2020 Sep 16. J Chem Inf Model. 2020. PMID: 32853525 Free PMC article.

6

Comparative Dynamics and Functional Mechanisms of the CYP17A1 Tunnels Regulated by Ligand Binding.

Xiao F, Song X, Tian P, Gan M, Verkhivker GM, Hu G. Xiao F, et al. Among authors: verkhivker gm. J Chem Inf Model. 2020 Jul 27;60(7):3632-3647. doi: 10.1021/acs.jcim.0c00447. Epub 2020 Jun 22. J Chem Inf Model. 2020. PMID: 32530640

7

Allosteric mechanism of the circadian protein Vivid resolved through Markov state model and machine learning analysis.

Zhou H, Dong Z, Verkhivker G, Zoltowski BD, Tao P. Zhou H, et al. Among authors: verkhivker g. PLoS Comput Biol. 2019 Feb 19;15(2):e1006801. doi: 10.1371/journal.pcbi.1006801. eCollection 2019 Feb. PLoS Comput Biol. 2019. PMID: 30779735 Free PMC article.

8

Molecular Simulations and Network Modeling Reveal an Allosteric Signaling in the SARS-CoV-2 Spike Proteins.

Verkhivker GM. Verkhivker GM. J Proteome Res. 2020 Nov 6;19(11):4587-4608. doi: 10.1021/acs.jproteome.0c00654. Epub 2020 Oct 2. J Proteome Res. 2020. PMID: 33006900 Free PMC article.

9

Establishing Computational Approaches Towards Identifying Malarial Allosteric Modulators: A Case Study of Plasmodium falciparum Hsp70s.

Amusengeri A, Astl L, Lobb K, Verkhivker GM, Tastan Bishop Ö. Amusengeri A, et al. Among authors: verkhivker gm. Int J Mol Sci. 2019 Nov 8;20(22):5574. doi: 10.3390/ijms20225574. Int J Mol Sci. 2019. PMID: 31717270 Free PMC article.

10

Data-driven computational analysis of allosteric proteins by exploring protein dynamics, residue coevolution and residue interaction networks.

Astl L, Verkhivker GM. Astl L, et al. Among authors: verkhivker gm. Biochim Biophys Acta Gen Subj. 2019 Jul 19:S0304-4165(19)30179-5. doi: 10.1016/j.bbagen.2019.07.008. Online ahead of print. Biochim Biophys Acta Gen Subj. 2019. PMID: 31330173

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