Gennady Verkhivker - Search Results

Year	Number of Results
2002	3
2003	3
2004	2
2005	1
2006	1
2007	4
2008	5
2009	9
2010	2
2011	4
2012	3
2013	3
2014	4
2015	3
2016	4
2017	5
2018	6
2019	8
2020	11
2021	10
2022	8

1

Editorial: Machine Learning in Biomolecular Simulations.

Verkhivker G, Spiwok V, Gervasio FL. Verkhivker G, et al. Front Mol Biosci. 2019 Aug 29;6:76. doi: 10.3389/fmolb.2019.00076. eCollection 2019. Front Mol Biosci. 2019. PMID: 31555661 Free PMC article. No abstract available.

2

Integrated Computational Approaches and Tools forAllosteric Drug Discovery.

Sheik Amamuddy O, Veldman W, Manyumwa C, Khairallah A, Agajanian S, Oluyemi O, Verkhivker G, Tastan Bishop O. Sheik Amamuddy O, et al. Among authors: verkhivker g. Int J Mol Sci. 2020 Jan 28;21(3):847. doi: 10.3390/ijms21030847. Int J Mol Sci. 2020. PMID: 32013012 Free PMC article. Review.

3

Dimeric allostery mechanism of the plant circadian clock photoreceptor ZEITLUPE.

Trozzi F, Wang F, Verkhivker G, Zoltowski BD, Tao P. Trozzi F, et al. Among authors: verkhivker g. PLoS Comput Biol. 2021 Jul 26;17(7):e1009168. doi: 10.1371/journal.pcbi.1009168. eCollection 2021 Jul. PLoS Comput Biol. 2021. PMID: 34310591 Free PMC article.

4

Making the invisible visible: Toward structural characterization of allosteric states, interaction networks, and allosteric regulatory mechanisms in protein kinases.

Verkhivker GM. Verkhivker GM. Curr Opin Struct Biol. 2021 Dec;71:71-78. doi: 10.1016/j.sbi.2021.06.002. Epub 2021 Jul 5. Curr Opin Struct Biol. 2021. PMID: 34237520 Review.

5

Integrated Biophysical Modeling of the SARS-CoV-2 Spike Protein Binding and Allosteric Interactions with Antibodies.

Verkhivker GM, Di Paola L. Verkhivker GM, et al. J Phys Chem B. 2021 May 13;125(18):4596-4619. doi: 10.1021/acs.jpcb.1c00395. Epub 2021 Apr 30. J Phys Chem B. 2021. PMID: 33929853 Free PMC article.

6

Allosteric Regulation at the Crossroads of New Technologies: Multiscale Modeling, Networks, and Machine Learning.

Verkhivker GM, Agajanian S, Hu G, Tao P. Verkhivker GM, et al. Front Mol Biosci. 2020 Jul 9;7:136. doi: 10.3389/fmolb.2020.00136. eCollection 2020. Front Mol Biosci. 2020. PMID: 32733918 Free PMC article. Review.

7

Cancer driver mutations in protein kinase genes.

Torkamani A, Verkhivker G, Schork NJ. Torkamani A, et al. Among authors: verkhivker g. Cancer Lett. 2009 Aug 28;281(2):117-27. doi: 10.1016/j.canlet.2008.11.008. Epub 2008 Dec 10. Cancer Lett. 2009. PMID: 19081671 Free PMC article. Review.

8

Integration of network models and evolutionary analysis into high-throughput modeling of protein dynamics and allosteric regulation: theory, tools and applications.

Liang Z, Verkhivker GM, Hu G. Liang Z, et al. Among authors: verkhivker gm. Brief Bioinform. 2020 May 21;21(3):815-835. doi: 10.1093/bib/bbz029. Brief Bioinform. 2020. PMID: 30911759 Review.

9

Comparative Perturbation-Based Modeling of the SARS-CoV-2 Spike Protein Binding with Host Receptor and Neutralizing Antibodies: Structurally Adaptable Allosteric Communication Hotspots Define Spike Sites Targeted by Global Circulating Mutations.

Verkhivker GM, Agajanian S, Oztas DY, Gupta G. Verkhivker GM, et al. Biochemistry. 2021 May 18;60(19):1459-1484. doi: 10.1021/acs.biochem.1c00139. Epub 2021 Apr 26. Biochemistry. 2021. PMID: 33900725 Free PMC article.

10

Dynamic Network Modeling of Allosteric Interactions and Communication Pathways in the SARS-CoV-2 Spike Trimer Mutants: Differential Modulation of Conformational Landscapes and Signal Transmission via Cascades of Regulatory Switches.

Verkhivker GM, Di Paola L. Verkhivker GM, et al. J Phys Chem B. 2021 Jan 28;125(3):850-873. doi: 10.1021/acs.jpcb.0c10637. Epub 2021 Jan 15. J Phys Chem B. 2021. PMID: 33448856 Free PMC article.

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