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Complete genome sequence of Halorhabdus utahensis type strain (AX-2).
Anderson I, Tindall BJ, Pomrenke H, Göker M, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, Chen F, Tice H, Cheng JF, Lucas S, Chertkov O, Bruce D, Brettin T, Detter JC, Han C, Goodwin L, Land M, Hauser L, Chang YJ, Jeffries CD, Pitluck S, Pati A, Mavromatis K, Ivanova N, Ovchinnikova G, Chen A, Palaniappan K, Chain P, Rohde M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk HP. Anderson I, et al. Stand Genomic Sci. 2009 Nov 22;1(3):218-25. doi: 10.4056/sigs.31864. Stand Genomic Sci. 2009. PMID: 21304660 Free PMC article.
Halorhabdus utahensis Waino et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its location on one of the deepest branches within the very extensive euryarchaeal family Halobacteriaceae. ...When grown on appropriate media, H.
Halorhabdus utahensis Waino et al. 2000 is the type species of the genus, which is of phylogenetic interest because of its loc
Pentose degradation in archaea: Halorhabdus species degrade D-xylose, L-arabinose and D-ribose via bacterial-type pathways.
Sutter JM, Johnsen U, Reinhardt A, Schönheit P. Sutter JM, et al. Extremophiles. 2020 Sep;24(5):759-772. doi: 10.1007/s00792-020-01192-y. Epub 2020 Aug 5. Extremophiles. 2020. PMID: 32761262 Free PMC article.
Ribokinase of Halorhabdus tiamatea and ribose-5-phosphate isomerase of Halorhabdus utahensis were characterized. This is the first report of pentose degradation via the bacterial-type pathways in archaea, in Halorhabdus species that likely acquired the …
Ribokinase of Halorhabdus tiamatea and ribose-5-phosphate isomerase of Halorhabdus utahensis were characterized. This i …
Halorhabdus utahensis gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea from Great Salt Lake, Utah.
Wainø M, Tindall BJ, Ingvorsen K. Wainø M, et al. Int J Syst Evol Microbiol. 2000 Jan;50 Pt 1:183-190. doi: 10.1099/00207713-50-1-183. Int J Syst Evol Microbiol. 2000. PMID: 10826803
On the basis of the data presented, it is proposed that strain AX-2T should be placed in a new taxon, for which the name Halorhabdus utahensis is appropriate. The type strain is strain AX-2T (= DSM 12940T)....
On the basis of the data presented, it is proposed that strain AX-2T should be placed in a new taxon, for which the name Halorhabdus
Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader.
Werner J, Ferrer M, Michel G, Mann AJ, Huang S, Juarez S, Ciordia S, Albar JP, Alcaide M, La Cono V, Yakimov MM, Antunes A, Taborda M, da Costa MS, Hai T, Glöckner FO, Golyshina OV, Golyshin PN, Teeling H; MAMBA Consortium. Werner J, et al. Environ Microbiol. 2014 Aug;16(8):2525-37. doi: 10.1111/1462-2920.12393. Epub 2014 Feb 27. Environ Microbiol. 2014. PMID: 24428220 Free PMC article.
Euryarchaea from the genus Halorhabdus have been found in hypersaline habitats worldwide, yet are represented by only two isolates: Halorhabdus utahensis AX-2(T) from the shallow Great Salt Lake of Utah, and Halorhabdus tiamatea SARL4B(T) from the Shab …
Euryarchaea from the genus Halorhabdus have been found in hypersaline habitats worldwide, yet are represented by only two isolates: …
Halorhabdus rudnickae sp. nov., a halophilic archaeon isolated from a salt mine borehole in Poland.
Albuquerque L, Kowalewicz-Kulbat M, Drzewiecka D, Stączek P, d'Auria G, Rosselló-Móra R, da Costa MS. Albuquerque L, et al. Syst Appl Microbiol. 2016 Mar;39(2):100-5. doi: 10.1016/j.syapm.2015.12.004. Epub 2015 Dec 18. Syst Appl Microbiol. 2016. PMID: 26749115
Analysis of the almost complete 16S rRNA gene sequence indicated that the strains WSM-64(T) and WSM-66 (99.7% identity) represented a member of the genus Halorhabdus in the family Halobacteriaceae. Both strains formed a distinct cluster and were most closely related to …
Analysis of the almost complete 16S rRNA gene sequence indicated that the strains WSM-64(T) and WSM-66 (99.7% identity) represented a member …
Genome sequence of Halorhabdus tiamatea, the first archaeon isolated from a deep-sea anoxic brine lake.
Antunes A, Alam I, Bajic VB, Stingl U. Antunes A, et al. J Bacteriol. 2011 Sep;193(17):4553-4. doi: 10.1128/JB.05462-11. Epub 2011 Jun 24. J Bacteriol. 2011. PMID: 21705593 Free PMC article.
We present the draft genome of Halorhabdus tiamatea, the first member of the Archaea ever isolated from a deep-sea anoxic brine. Genome comparison with Halorhabdus utahensis revealed some striking differences, including a marked increase in genes associated w …
We present the draft genome of Halorhabdus tiamatea, the first member of the Archaea ever isolated from a deep-sea anoxic brine. Geno …
Production of beta-xylanase and beta-xylosidase by the extremely halophilic archaeon Halorhabdus utahensis.
Wainø M, Ingvorsen K. Wainø M, et al. Extremophiles. 2003 Apr;7(2):87-93. doi: 10.1007/s00792-002-0299-y. Epub 2002 Nov 14. Extremophiles. 2003. PMID: 12664260
The extremely halophilic archaeon, Halorhabdus utahensis, isolated from the Great Salt Lake, Utah, produced beta-xylanase and beta-xylosidase activities. ...
The extremely halophilic archaeon, Halorhabdus utahensis, isolated from the Great Salt Lake, Utah, produced beta-xylanase and …
Evaluation of three automated genome annotations for Halorhabdus utahensis.
Bakke P, Carney N, Deloache W, Gearing M, Ingvorsen K, Lotz M, McNair J, Penumetcha P, Simpson S, Voss L, Win M, Heyer LJ, Campbell AM. Bakke P, et al. PLoS One. 2009 Jul 20;4(7):e6291. doi: 10.1371/journal.pone.0006291. PLoS One. 2009. PMID: 19617911 Free PMC article.
Errors in the annotations are routinely deposited in databases such as NCBI and used to validate subsequent annotation errors. We submitted the genome sequence of halophilic archaeon Halorhabdus utahensis to be analyzed by three genome annotation services. ...Additi …
Errors in the annotations are routinely deposited in databases such as NCBI and used to validate subsequent annotation errors. We submitted …
Halorhabdus amylolytica sp. nov. and Halorhabdus salina sp. nov., isolated from hypersaline environments.
Wang R, Chen F, Wang J, Liu A, Ke L, Wan F, Chen S. Wang R, et al. Int J Syst Evol Microbiol. 2022 Apr;72(4). doi: 10.1099/ijsem.0.005346. Int J Syst Evol Microbiol. 2022. PMID: 35482509
The 16S rRNA and rpoB' gene sequence similarities between strains H27(T) and FL145(T) were 96.60 and 88.77%. Strains H27(T) and FL145(T) were both closely related to Halorhabdus rudnickae WSM-64(T), Halorhabdus tiamatea SARL4B(T) and Halorhabdus utahensis
The 16S rRNA and rpoB' gene sequence similarities between strains H27(T) and FL145(T) were 96.60 and 88.77%. Strains H27(T) and FL145(T) wer …
Halorhabdus tiamatea sp. nov., a non-pigmented, extremely halophilic archaeon from a deep-sea, hypersaline anoxic basin of the Red Sea, and emended description of the genus Halorhabdus.
Antunes A, Taborda M, Huber R, Moissl C, Nobre MF, da Costa MS. Antunes A, et al. Int J Syst Evol Microbiol. 2008 Jan;58(Pt 1):215-20. doi: 10.1099/ijs.0.65316-0. Int J Syst Evol Microbiol. 2008. PMID: 18175711
Phylogenetic analysis of the 16S rRNA gene sequence revealed a close proximity to Halorhabdus utahensis (99.3%), the sole species of the genus Halorhabdus. ...An emended description of the genus Halorhabdus is also proposed....
Phylogenetic analysis of the 16S rRNA gene sequence revealed a close proximity to Halorhabdus utahensis (99.3%), the sole spec …
15 results