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A review of methods and databases for metagenomic classification and assembly.

Breitwieser FP, Lu J, Salzberg SL. Breitwieser FP, et al. Among authors: lu j. Brief Bioinform. 2019 Jul 19;20(4):1125-1136. doi: 10.1093/bib/bbx120. Brief Bioinform. 2019. PMID: 29028872 Free PMC article. Review.

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Risk SNP-Mediated Promoter-Enhancer Switching Drives Prostate Cancer through lncRNA PCAT19.

Hua JT, Ahmed M, Guo H, Zhang Y, Chen S, Soares F, Lu J, Zhou S, Wang M, Li H, Larson NB, McDonnell SK, Patel PS, Liang Y, Yao CQ, van der Kwast T, Lupien M, Feng FY, Zoubeidi A, Tsao MS, Thibodeau SN, Boutros PC, He HH. Hua JT, et al. Among authors: lu j. Cell. 2018 Jul 26;174(3):564-575.e18. doi: 10.1016/j.cell.2018.06.014. Epub 2018 Jul 19. Cell. 2018. PMID: 30033362 Free article.

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Magnitude and Dynamics of the T-Cell Response to SARS-CoV-2 Infection at Both Individual and Population Levels.

Snyder TM, Gittelman RM, Klinger M, May DH, Osborne EJ, Taniguchi R, Zahid HJ, Kaplan IM, Dines JN, Noakes MN, Pandya R, Chen X, Elasady S, Svejnoha E, Ebert P, Pesesky MW, De Almeida P, O'Donnell H, DeGottardi Q, Keitany G, Lu J, Vong A, Elyanow R, Fields P, Greissl J, Baldo L, Semprini S, Cerchione C, Mazza M, Delmonte OM, Dobbs K, Carreño-Tarragona G, Barrio S, Imberti L, Sottini A, Quiros-Roldan E, Rossi C, Biondi A, Bettini LR, D'Angio M, Bonfanti P, Tompkins MF, Alba C, Dalgard C, Sambri V, Martinelli G, Goldman JD, Heath JR, Su HC, Notarangelo LD, Martinez-Lopez J, Carlson JM, Robins HS. Snyder TM, et al. Among authors: lu j. medRxiv. 2020 Aug 4:2020.07.31.20165647. doi: 10.1101/2020.07.31.20165647. Preprint. medRxiv. 2020. PMID: 32793919 Free PMC article.

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Tolerance is established in polyclonal CD4(+) T cells by distinct mechanisms, according to self-peptide expression patterns.

Malhotra D, Linehan JL, Dileepan T, Lee YJ, Purtha WE, Lu JV, Nelson RW, Fife BT, Orr HT, Anderson MS, Hogquist KA, Jenkins MK. Malhotra D, et al. Among authors: lu jv. Nat Immunol. 2016 Feb;17(2):187-95. doi: 10.1038/ni.3327. Epub 2016 Jan 4. Nat Immunol. 2016. PMID: 26726812 Free PMC article.

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Improved metagenomic analysis with Kraken 2.

Wood DE, Lu J, Langmead B. Wood DE, et al. Among authors: lu j. Genome Biol. 2019 Nov 28;20(1):257. doi: 10.1186/s13059-019-1891-0. Genome Biol. 2019. PMID: 31779668 Free PMC article.

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Readability Metrics of Provider Postoperative Handouts in Urology.

Lian F, Lu J, White MD, Kogan BA. Lian F, et al. Among authors: lu j. Urology. 2020 Dec;146:49-53. doi: 10.1016/j.urology.2020.08.044. Epub 2020 Sep 3. Urology. 2020. PMID: 32890622

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PrimerROC: accurate condition-independent dimer prediction using ROC analysis.

Johnston AD, Lu J, Ru KL, Korbie D, Trau M. Johnston AD, et al. Among authors: lu j. Sci Rep. 2019 Jan 18;9(1):209. doi: 10.1038/s41598-018-36612-9. Sci Rep. 2019. PMID: 30659212 Free PMC article.

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Arene Substitution Design for Controlled Conformational Changes of Dibenzocycloocta-1,5-dienes.

Fu W, Alam TM, Li J, Bustamante J, Lien T, Adams RW, Teat SJ, Stokes BJ, Yang W, Liu Y, Lu JQ. Fu W, et al. Among authors: lu jq. J Am Chem Soc. 2020 Sep 30;142(39):16651-16660. doi: 10.1021/jacs.0c06579. Epub 2020 Sep 17. J Am Chem Soc. 2020. PMID: 32881488

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Health Care Expenditures of Medicare Beneficiaries with Normal Pressure Hydrocephalus.

Sharkey P, Pinilla-Monsalve G, Rigamonti A, Carson K, Robison J, Vivas-Buitrago T, Jusué-Torres I, Clemens G, Sanyal A, Hoffberger J, Sankey EW, Lu J, Adams A, Rigamonti D. Sharkey P, et al. Among authors: lu j. World Neurosurg. 2019 Jul;127:e548-e555. doi: 10.1016/j.wneu.2019.03.201. Epub 2019 Mar 28. World Neurosurg. 2019. PMID: 30928595

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Intranasal Acetaminophen Abuse and Nasal, Pharyngeal, and Laryngotracheal Damage.

Lin Y, Lu JY, Pinheiro-Neto CD, Jones DM, Gildener-Leapman N. Lin Y, et al. Among authors: lu jy. Cureus. 2019 Aug 19;11(8):e5432. doi: 10.7759/cureus.5432. Cureus. 2019. PMID: 31485385 Free PMC article.

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