Jiri Filipovic - Search Results

Year	Number of Results
2019	4
2020	1
2021	6
2022	0

1

Simulation of Ligand Transport in Receptors Using CaverDock.

Hozzová J, Vávra O, Bednář D, Filipovič J. Hozzová J, et al. Among authors: filipovic j. Methods Mol Biol. 2021;2266:105-124. doi: 10.1007/978-1-0716-1209-5_6. Methods Mol Biol. 2021. PMID: 33759123

2

Advances in Xmipp for Cryo-Electron Microscopy: From Xmipp to Scipion.

Strelak D, Jiménez-Moreno A, Vilas JL, Ramírez-Aportela E, Sánchez-García R, Maluenda D, Vargas J, Herreros D, Fernández-Giménez E, de Isidro-Gómez FP, Horacek J, Myska D, Horacek M, Conesa P, Fonseca-Reyna YC, Jiménez J, Martínez M, Harastani M, Jonić S, Filipovic J, Marabini R, Carazo JM, Sorzano COS. Strelak D, et al. Among authors: filipovic j. Molecules. 2021 Oct 15;26(20):6224. doi: 10.3390/molecules26206224. Molecules. 2021. PMID: 34684805 Free PMC article.

3

Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods.

Sorzano COS, Jiménez-Moreno A, Maluenda D, Ramírez-Aportela E, Martínez M, Cuervo A, Melero R, Conesa JJ, Sánchez-García R, Strelak D, Filipovic J, Fernández-Giménez E, de Isidro-Gómez F, Herreros D, Conesa P, Del Caño L, Fonseca Y, de la Morena JJ, Macías JR, Losana P, Marabini R, Carazo JM. Sorzano COS, et al. Among authors: filipovic j. Methods Mol Biol. 2021;2305:257-289. doi: 10.1007/978-1-0716-1406-8_13. Methods Mol Biol. 2021. PMID: 33950394

4

CaverDock: A Novel Method for the Fast Analysis of Ligand Transport.

Filipovic J, Vavra O, Plhak J, Bednar D, Marques SM, Brezovsky J, Matyska L, Damborsky J. Filipovic J, et al. IEEE/ACM Trans Comput Biol Bioinform. 2020 Sep-Oct;17(5):1625-1638. doi: 10.1109/TCBB.2019.2907492. Epub 2019 Mar 26. IEEE/ACM Trans Comput Biol Bioinform. 2020. PMID: 30932844

5

Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning.

Pinto GP, Vavra O, Marques SM, Filipovic J, Bednar D, Damborsky J. Pinto GP, et al. Among authors: filipovic j. Comput Struct Biotechnol J. 2021;19:3187-3197. doi: 10.1016/j.csbj.2021.05.043. Epub 2021 May 26. Comput Struct Biotechnol J. 2021. PMID: 34104357 Free PMC article.

6

Fast Screening of Inhibitor Binding/Unbinding Using Novel Software Tool CaverDock.

Pinto GP, Vavra O, Filipovic J, Stourac J, Bednar D, Damborsky J. Pinto GP, et al. Among authors: filipovic j. Front Chem. 2019 Oct 29;7:709. doi: 10.3389/fchem.2019.00709. eCollection 2019. Front Chem. 2019. PMID: 31737596 Free PMC article.

7

Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport.

Stourac J, Vavra O, Kokkonen P, Filipovic J, Pinto G, Brezovsky J, Damborsky J, Bednar D. Stourac J, et al. Among authors: filipovic j. Nucleic Acids Res. 2019 Jul 2;47(W1):W414-W422. doi: 10.1093/nar/gkz378. Nucleic Acids Res. 2019. PMID: 31114897 Free PMC article.

8

CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels.

Vavra O, Filipovic J, Plhak J, Bednar D, Marques SM, Brezovsky J, Stourac J, Matyska L, Damborsky J. Vavra O, et al. Among authors: filipovic j. Bioinformatics. 2019 Dec 1;35(23):4986-4993. doi: 10.1093/bioinformatics/btz386. Bioinformatics. 2019. PMID: 31077297

9

Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials.

Herreros D, Lederman RR, Krieger J, Jiménez-Moreno A, Martínez M, Myška D, Strelak D, Filipovic J, Bahar I, Carazo JM, Sanchez COS. Herreros D, et al. Among authors: filipovic j. IUCrJ. 2021 Oct 14;8(Pt 6):992-1005. doi: 10.1107/S2052252521008903. eCollection 2021 Nov 1. IUCrJ. 2021. PMID: 34804551 Free PMC article.

10

Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures.

Hozzová J, Filipovič J, Nezarat A, Ol'ha J, Petrovič F. Hozzová J, et al. Among authors: filipovic j. Data Brief. 2021 Nov 24;39:107631. doi: 10.1016/j.dib.2021.107631. eCollection 2021 Dec. Data Brief. 2021. PMID: 34877392 Free PMC article.

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