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Advances in metabolic modeling of oleaginous microalgae.
Tibocha-Bonilla JD, Zuñiga C, Godoy-Silva RD, Zengler K. Tibocha-Bonilla JD, et al. Biotechnol Biofuels. 2018 Sep 5;11:241. doi: 10.1186/s13068-018-1244-3. eCollection 2018. Biotechnol Biofuels. 2018. PMID: 30202436 Free PMC article. Review.
Mixotrophic growth of a ubiquitous marine diatom.
Kumar M, Tibocha-Bonilla JD, Füssy Z, Lieng C, Schwenck SM, Levesque AV, Al-Bassam MM, Passi A, Neal M, Zuniga C, Kaiyom F, Espinoza JL, Lim H, Polson SW, Allen LZ, Zengler K. Kumar M, et al. Among authors: tibocha bonilla jd. Sci Adv. 2024 Jul 19;10(29):eado2623. doi: 10.1126/sciadv.ado2623. Epub 2024 Jul 17. Sci Adv. 2024. PMID: 39018398 Free PMC article.
Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic compounds.
Canto-Encalada G, Tec-Campos D, Tibocha-Bonilla JD, Zengler K, Zepeda A, Zuñiga C. Canto-Encalada G, et al. Among authors: tibocha bonilla jd. PLoS Comput Biol. 2022 Feb 2;18(2):e1009828. doi: 10.1371/journal.pcbi.1009828. eCollection 2022 Feb. PLoS Comput Biol. 2022. PMID: 35108266 Free PMC article.
The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions.
Tec-Campos D, Posadas C, Tibocha-Bonilla JD, Thiruppathy D, Glonek N, Zuñiga C, Zepeda A, Zengler K. Tec-Campos D, et al. Among authors: tibocha bonilla jd. PLoS Comput Biol. 2023 Aug 9;19(8):e1011371. doi: 10.1371/journal.pcbi.1011371. eCollection 2023 Aug. PLoS Comput Biol. 2023. PMID: 37556472 Free PMC article.