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Ten simple rules to run a successful BioHackathon.

Garcia L, Antezana E, Garcia A, Bolton E, Jimenez R, Prins P, Banda JM, Katayama T. Garcia L, et al. Among authors: banda jm. PLoS Comput Biol. 2020 May 7;16(5):e1007808. doi: 10.1371/journal.pcbi.1007808. eCollection 2020 May. PLoS Comput Biol. 2020. PMID: 32379758 Free PMC article. No abstract available.

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Social Media Mining Toolkit (SMMT).

Tekumalla R, Banda JM. Tekumalla R, et al. Among authors: banda jm. Genomics Inform. 2020 Jun;18(2):e16. doi: 10.5808/GI.2020.18.2.e16. Epub 2020 Jun 15. Genomics Inform. 2020. PMID: 32634870 Free PMC article.

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A Biomedically oriented automatically annotated Twitter COVID-19 Dataset.

Robles Hernandez LA, Callahan TJ, Banda JM. Robles Hernandez LA, et al. Among authors: banda jm. ArXiv. 2021 Jul 27:arXiv:2107.12565v1. Preprint. ArXiv. 2021. PMID: 34341767 Free PMC article. Updated.

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A biomedically oriented automatically annotated Twitter COVID-19 dataset.

Hernandez LAR, Callahan TJ, Banda JM. Hernandez LAR, et al. Among authors: banda jm. Genomics Inform. 2021 Sep;19(3):e21. doi: 10.5808/gi.21011. Epub 2021 Sep 30. Genomics Inform. 2021. PMID: 34638168 Free PMC article.

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A Minimal Information Model for Potential Drug-Drug Interactions.

Hochheiser H, Jing X, Garcia EA, Ayvaz S, Sahay R, Dumontier M, Banda JM, Beyan O, Brochhausen M, Draper E, Habiel S, Hassanzadeh O, Herrero-Zazo M, Hocum B, Horn J, LeBaron B, Malone DC, Nytrø Ø, Reese T, Romagnoli K, Schneider J, Zhang LY, Boyce RD. Hochheiser H, et al. Among authors: banda jm. Front Pharmacol. 2021 Mar 8;11:608068. doi: 10.3389/fphar.2020.608068. eCollection 2020. Front Pharmacol. 2021. PMID: 33762928 Free PMC article.

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ACE: the Advanced Cohort Engine for searching longitudinal patient records.

Callahan A, Polony V, Posada JD, Banda JM, Gombar S, Shah NH. Callahan A, et al. Among authors: banda jm. J Am Med Inform Assoc. 2021 Jul 14;28(7):1468-1479. doi: 10.1093/jamia/ocab027. J Am Med Inform Assoc. 2021. PMID: 33712854 Free PMC article.

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Characterizing all-cause excess mortality patterns during COVID-19 pandemic in Mexico.

Dahal S, Banda JM, Bento AI, Mizumoto K, Chowell G. Dahal S, et al. Among authors: banda jm. BMC Infect Dis. 2021 May 7;21(1):432. doi: 10.1186/s12879-021-06122-7. BMC Infect Dis. 2021. PMID: 33962563 Free PMC article.

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Normalizing Clinical Document Titles to LOINC Document Ontology: an Initial Study.

Zuo X, Li J, Zhao B, Zhou Y, Dong X, Duke J, Natarajan K, Hripcsak G, Shah N, Banda JM, Reeves R, Miller T, Xu H. Zuo X, et al. Among authors: banda jm. AMIA Annu Symp Proc. 2021 Jan 25;2020:1441-1450. eCollection 2020. AMIA Annu Symp Proc. 2021. PMID: 33936520 Free PMC article.

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Characterization of Anonymous Physician Perspectives on COVID-19 Using Social Media Data.

Sullivan KJ, Burden M, Keniston A, Banda JM, Hunter LE. Sullivan KJ, et al. Among authors: banda jm. Pac Symp Biocomput. 2021;26:95-106. Pac Symp Biocomput. 2021. PMID: 33691008 Free PMC article.

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Transmission dynamics and forecasts of the COVID-19 pandemic in Mexico, March-December 2020.

Tariq A, Banda JM, Skums P, Dahal S, Castillo-Garsow C, Espinoza B, Brizuela NG, Saenz RA, Kirpich A, Luo R, Srivastava A, Gutierrez H, Chan NG, Bento AI, Jimenez-Corona ME, Chowell G. Tariq A, et al. Among authors: banda jm. PLoS One. 2021 Jul 21;16(7):e0254826. doi: 10.1371/journal.pone.0254826. eCollection 2021. PLoS One. 2021. PMID: 34288969 Free PMC article.

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