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Page 1
Antibiotic Susceptibility Patterns for Carbapenem-Resistant Enterobacteriaceae.
Armin S, Fallah F, Karimi A, Karbasiyan F, Alebouyeh M, Rafiei Tabatabaei S, Rajabnejad M, Mansour Ghanaie R, Fahimzad SA, Abdollahi N, Khodaei H, Azimi L. Armin S, et al. Int J Microbiol. 2023 Feb 20;2023:8920977. doi: 10.1155/2023/8920977. eCollection 2023. Int J Microbiol. 2023. PMID: 36860272 Free PMC article.
Antibiotic susceptibility of CRE against fosfomycin, rifampin, metronidazole, tigecycline, and aztreonam was detected by disk diffusion method and colistin by MIC. In this study, 1222 E. coli, 696 K. pneumoniae, and 621 Enterobacter spp. were collected from 10 hospitals in …
Antibiotic susceptibility of CRE against fosfomycin, rifampin, metronidazole, tigecycline, and aztreonam was detected by disk diffusion meth …
Estimating Genome-wide Phylogenies Using Probabilistic Topic Modeling.
Khodaei M, Edwards SV, Beerli P. Khodaei M, et al. bioRxiv [Preprint]. 2024 Nov 22:2023.12.20.572577. doi: 10.1101/2023.12.20.572577. bioRxiv. 2024. Update in: Syst Biol. 2025 Dec 12;74(5):850-861. doi: 10.1093/sysbio/syaf015. PMID: 39605625 Free PMC article. Updated. Preprint.
The method uses probabilistic topic modeling (specifically, Latent Dirichlet Allocation or LDA) to extract 'topic' frequencies from k -mers, which are derived from multilocus DNA sequences. These extracted frequencies then serve as an input for the program C ontml in the P …
The method uses probabilistic topic modeling (specifically, Latent Dirichlet Allocation or LDA) to extract 'topic' frequencies from k …
Estimating Genome-Wide Phylogenies Using Probabilistic Topic Modeling.
Khodaei M, Edwards SV, Beerli P. Khodaei M, et al. Syst Biol. 2025 Dec 12;74(5):850-861. doi: 10.1093/sysbio/syaf015. Syst Biol. 2025. PMID: 40324034 Free PMC article.
The method uses probabilistic topic modeling (specifically, Latent Dirichlet Allocation) to extract "topic" frequencies from k-mers, which are derived from multilocus DNA sequences. These extracted frequencies then serve as an input for the program Contml in the PHYLIP pac …
The method uses probabilistic topic modeling (specifically, Latent Dirichlet Allocation) to extract "topic" frequencies from k-mers, …
Investigating the flexural behavior of nanomodified multi-delaminated composites using acoustic emission technique.
Alimirzaei S, Barbaz-Isfahani R, Khodaei A, Najafabadi MA, Sadighi M. Alimirzaei S, et al. Ultrasonics. 2024 Mar;138:107249. doi: 10.1016/j.ultras.2024.107249. Epub 2024 Jan 17. Ultrasonics. 2024. PMID: 38241972
The most substantial enhancement is observed in the composite incorporating 0.3 wt% nanosilica + 0.5 wt% carbon nanotubes. Furthermore, genetic K-means and hierarchical clustering techniques are employed to classify different damage mechanisms based on the peak frequency a …
The most substantial enhancement is observed in the composite incorporating 0.3 wt% nanosilica + 0.5 wt% carbon nanotubes. Furthermore, gene …
Improved heat shock method for extracting total RNA from nasopharyngeal swab samples even with low viral load.
Khodaei H, Azimi L, Akhavan Sepahy A, Ashrafi F, Rajabnejad M. Khodaei H, et al. Diagn Microbiol Infect Dis. 2024 May;109(1):116210. doi: 10.1016/j.diagmicrobio.2024.116210. Epub 2024 Feb 10. Diagn Microbiol Infect Dis. 2024. PMID: 38452554
Time, centrifuge speed and duration, proteinase K, and RNA carrier were optimized. The optimized parameters included treating the sample with 5 mug/muL at 56C for 5 minutes, heating at 95C for 5 minutes followed by thermal shock in ice for 3 minutes, adding 4 mug/muL RNA c …
Time, centrifuge speed and duration, proteinase K, and RNA carrier were optimized. The optimized parameters included treating the sam …
Spectroscopic studies on the interaction of aspartame with human serum albumin.
Kheirdoosh F, Kashanian S, Khodaei MM, Sariaslani M, Falsafi M, Moghadam NH, Salehzadeh S, Pazhavand M, Kashanian M. Kheirdoosh F, et al. Nucleosides Nucleotides Nucleic Acids. 2021;40(3):300-316. doi: 10.1080/15257770.2021.1872792. Epub 2021 Jan 16. Nucleosides Nucleotides Nucleic Acids. 2021. PMID: 33455539
The results indicated that the binding of APM to HSA caused fluorescence quenching of HSA through static quenching mechanism with binding constant 1.42 10(+4) M(-1) at 298 K and the number of binding sites is approximately one. Thermodynamic parameters, enthalpy changes (d …
The results indicated that the binding of APM to HSA caused fluorescence quenching of HSA through static quenching mechanism with binding co …
Spectroscopic studies on the interaction of isatin with calf thymus DNA.
Kashanian S, Khodaei MM, Pakravan P. Kashanian S, et al. DNA Cell Biol. 2010 Oct;29(10):639-46. doi: 10.1089/dna.2010.1054. DNA Cell Biol. 2010. PMID: 20590475
Thermodynamic parameters enthalpy change (deltaH) and entropy change (deltaS) were calculated to be +27.42 kJ mol-1 and +201 J mol-1 K-1 according to Van't Hoff's equation, which indicated that the reaction is predominantly entropically driven. ...
Thermodynamic parameters enthalpy change (deltaH) and entropy change (deltaS) were calculated to be +27.42 kJ mol-1 and +201 J mol-1 K …
Gating behavior of endoplasmic reticulum potassium channels of rat hepatocytes in diabetes.
Ghasemi M, Khodaei N, Salari S, Eliassi A, Saghiri R. Ghasemi M, et al. Iran Biomed J. 2014 Jul;18(3):165-72. doi: 10.6091/ibj.1308.2014. Iran Biomed J. 2014. PMID: 24842143 Free PMC article.
Ion channel incorporation of rough endoplasmic reticulum of diabetic hepatocytes into the bilayer lipid membrane allowed the characterization of K+ channel. RESULTS: Ion channel incorporation of rough endoplasmic reticulum vesicles into the bilayer lipid revealed that the …
Ion channel incorporation of rough endoplasmic reticulum of diabetic hepatocytes into the bilayer lipid membrane allowed the characterizatio …
In vitro DNA binding studies of Aspartame, an artificial sweetener.
Kashanian S, Khodaei MM, Kheirdoosh F. Kashanian S, et al. J Photochem Photobiol B. 2013 Mar 5;120:104-10. doi: 10.1016/j.jphotobiol.2013.01.001. Epub 2013 Jan 11. J Photochem Photobiol B. 2013. PMID: 23375483
Thermodynamic parameters, enthalpy changes (deltaH) and entropy changes (deltaS) were calculated to be +181kJmol(-1) and +681Jmol(-1)K(-1) according to Van't Hoff equation, which indicated that reaction is predominantly entropically driven. ...
Thermodynamic parameters, enthalpy changes (deltaH) and entropy changes (deltaS) were calculated to be +181kJmol(-1) and +681Jmol(-1)K …
16 results