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Year Number of Results
2012 1
2013 1
2014 2
2015 1
2016 2
2017 2
2018 2
2019 1
2020 2
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14 results
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Page 1
Current Challenges in Plant Eco-Metabolomics.
Peters K, Worrich A, Weinhold A, Alka O, Balcke G, Birkemeyer C, Bruelheide H, Calf OW, Dietz S, Dührkop K, Gaquerel E, Heinig U, Kücklich M, Macel M, Müller C, Poeschl Y, Pohnert G, Ristok C, Rodríguez VM, Ruttkies C, Schuman M, Schweiger R, Shahaf N, Steinbeck C, Tortosa M, Treutler H, Ueberschaar N, Velasco P, Weiß BM, Widdig A, Neumann S, Dam NMV. Peters K, et al. Among authors: duhrkop k. Int J Mol Sci. 2018 May 6;19(5):1385. doi: 10.3390/ijms19051385. Int J Mol Sci. 2018. PMID: 29734799 Free PMC article. Review.
Fragmentation trees reloaded.
Böcker S, Dührkop K. Böcker S, et al. Among authors: duhrkop k. J Cheminform. 2016 Feb 1;8:5. doi: 10.1186/s13321-016-0116-8. eCollection 2016. J Cheminform. 2016. PMID: 26839597 Free PMC article.
Bayesian networks for mass spectrometric metabolite identification via molecular fingerprints.
Ludwig M, Dührkop K, Böcker S. Ludwig M, et al. Among authors: duhrkop k. Bioinformatics. 2018 Jul 1;34(13):i333-i340. doi: 10.1093/bioinformatics/bty245. Bioinformatics. 2018. PMID: 29949965 Free PMC article.
SIRIUS 4: a rapid tool for turning tandem mass spectra into metabolite structure information.
Dührkop K, Fleischauer M, Ludwig M, Aksenov AA, Melnik AV, Meusel M, Dorrestein PC, Rousu J, Böcker S. Dührkop K, et al. Nat Methods. 2019 Apr;16(4):299-302. doi: 10.1038/s41592-019-0344-8. Epub 2019 Mar 18. Nat Methods. 2019. PMID: 30886413
Critical Assessment of Small Molecule Identification 2016: automated methods.
Schymanski EL, Ruttkies C, Krauss M, Brouard C, Kind T, Dührkop K, Allen F, Vaniya A, Verdegem D, Böcker S, Rousu J, Shen H, Tsugawa H, Sajed T, Fiehn O, Ghesquière B, Neumann S. Schymanski EL, et al. Among authors: duhrkop k. J Cheminform. 2017 Mar 27;9(1):22. doi: 10.1186/s13321-017-0207-1. J Cheminform. 2017. PMID: 29086042 Free PMC article.
Significance estimation for large scale metabolomics annotations by spectral matching.
Scheubert K, Hufsky F, Petras D, Wang M, Nothias LF, Dührkop K, Bandeira N, Dorrestein PC, Böcker S. Scheubert K, et al. Among authors: duhrkop k. Nat Commun. 2017 Nov 14;8(1):1494. doi: 10.1038/s41467-017-01318-5. Nat Commun. 2017. PMID: 29133785 Free PMC article.
Fast metabolite identification with Input Output Kernel Regression.
Brouard C, Shen H, Dührkop K, d'Alché-Buc F, Böcker S, Rousu J. Brouard C, et al. Among authors: duhrkop k. Bioinformatics. 2016 Jun 15;32(12):i28-i36. doi: 10.1093/bioinformatics/btw246. Bioinformatics. 2016. PMID: 27307628 Free PMC article.
Searching molecular structure databases with tandem mass spectra using CSI:FingerID.
Dührkop K, Shen H, Meusel M, Rousu J, Böcker S. Dührkop K, et al. Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12580-5. doi: 10.1073/pnas.1509788112. Epub 2015 Sep 21. Proc Natl Acad Sci U S A. 2015. PMID: 26392543 Free PMC article.
Metabolite identification through multiple kernel learning on fragmentation trees.
Shen H, Dührkop K, Böcker S, Rousu J. Shen H, et al. Among authors: duhrkop k. Bioinformatics. 2014 Jun 15;30(12):i157-64. doi: 10.1093/bioinformatics/btu275. Bioinformatics. 2014. PMID: 24931979 Free PMC article.
Feature-based molecular networking in the GNPS analysis environment.
Nothias LF, Petras D, Schmid R, Dührkop K, Rainer J, Sarvepalli A, Protsyuk I, Ernst M, Tsugawa H, Fleischauer M, Aicheler F, Aksenov AA, Alka O, Allard PM, Barsch A, Cachet X, Caraballo-Rodriguez AM, Da Silva RR, Dang T, Garg N, Gauglitz JM, Gurevich A, Isaac G, Jarmusch AK, Kameník Z, Kang KB, Kessler N, Koester I, Korf A, Le Gouellec A, Ludwig M, Martin H C, McCall LI, McSayles J, Meyer SW, Mohimani H, Morsy M, Moyne O, Neumann S, Neuweger H, Nguyen NH, Nothias-Esposito M, Paolini J, Phelan VV, Pluskal T, Quinn RA, Rogers S, Shrestha B, Tripathi A, van der Hooft JJJ, Vargas F, Weldon KC, Witting M, Yang H, Zhang Z, Zubeil F, Kohlbacher O, Böcker S, Alexandrov T, Bandeira N, Wang M, Dorrestein PC. Nothias LF, et al. Among authors: duhrkop k. Nat Methods. 2020 Sep;17(9):905-908. doi: 10.1038/s41592-020-0933-6. Epub 2020 Aug 24. Nat Methods. 2020. PMID: 32839597
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