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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2002 3
2004 2
2005 2
2006 3
2007 3
2008 5
2009 7
2010 4
2011 7
2012 7
2013 7
2014 8
2015 6
2016 7
2017 6
2018 4
2019 1
2020 6
2021 8
2022 3
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92 results
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Page 1
Computational pan-genomics: status, promises and challenges.
Computational Pan-Genomics Consortium. Computational Pan-Genomics Consortium. Brief Bioinform. 2018 Jan 1;19(1):118-135. doi: 10.1093/bib/bbw089. Brief Bioinform. 2018. PMID: 27769991 Free PMC article. Review.
The Collaborative Research Center FONDA.
Leser U, Hilbrich M, Draxl C, Eisert P, Grunske L, Hostert P, Kainmüller D, Kao O, Kehr B, Kehrer T, Koch C, Markl V, Meyerhenke H, Rabl T, Reinefeld A, Reinert K, Ritter K, Scheuermann B, Schintke F, Schweikardt N, Weidlich M. Leser U, et al. Among authors: reinert k. Datenbank Spektrum. 2021;21(3):255-260. doi: 10.1007/s13222-021-00397-5. Epub 2021 Nov 12. Datenbank Spektrum. 2021. PMID: 34786019 Free PMC article.
Critical Assessment of Metagenome Interpretation: the second round of challenges.
Meyer F, Fritz A, Deng ZL, Koslicki D, Lesker TR, Gurevich A, Robertson G, Alser M, Antipov D, Beghini F, Bertrand D, Brito JJ, Brown CT, Buchmann J, Buluç A, Chen B, Chikhi R, Clausen PTLC, Cristian A, Dabrowski PW, Darling AE, Egan R, Eskin E, Georganas E, Goltsman E, Gray MA, Hansen LH, Hofmeyr S, Huang P, Irber L, Jia H, Jørgensen TS, Kieser SD, Klemetsen T, Kola A, Kolmogorov M, Korobeynikov A, Kwan J, LaPierre N, Lemaitre C, Li C, Limasset A, Malcher-Miranda F, Mangul S, Marcelino VR, Marchet C, Marijon P, Meleshko D, Mende DR, Milanese A, Nagarajan N, Nissen J, Nurk S, Oliker L, Paoli L, Peterlongo P, Piro VC, Porter JS, Rasmussen S, Rees ER, Reinert K, Renard B, Robertsen EM, Rosen GL, Ruscheweyh HJ, Sarwal V, Segata N, Seiler E, Shi L, Sun F, Sunagawa S, Sørensen SJ, Thomas A, Tong C, Trajkovski M, Tremblay J, Uritskiy G, Vicedomini R, Wang Z, Wang Z, Wang Z, Warren A, Willassen NP, Yelick K, You R, Zeller G, Zhao Z, Zhu S, Zhu J, Garrido-Oter R, Gastmeier P, Hacquard S, Häußler S, Khaledi A, Maechler F, Mesny F, Radutoiu S, Schulze-Lefert P, Smit N, Strowig T, Bremges A, Sczyrba A, McHardy AC. Meyer F, et al. Among authors: reinert k. Nat Methods. 2022 Apr;19(4):429-440. doi: 10.1038/s41592-022-01431-4. Epub 2022 Apr 8. Nat Methods. 2022. PMID: 35396482 Free PMC article.
Alignment of Next-Generation Sequencing Reads.
Reinert K, Langmead B, Weese D, Evers DJ. Reinert K, et al. Annu Rev Genomics Hum Genet. 2015;16:133-51. doi: 10.1146/annurev-genom-090413-025358. Epub 2015 May 4. Annu Rev Genomics Hum Genet. 2015. PMID: 25939052 Review.
GenMap: ultra-fast computation of genome mappability.
Pockrandt C, Alzamel M, Iliopoulos CS, Reinert K. Pockrandt C, et al. Among authors: reinert k. Bioinformatics. 2020 Jun 1;36(12):3687-3692. doi: 10.1093/bioinformatics/btaa222. Bioinformatics. 2020. PMID: 32246826 Free PMC article.
Tools for label-free peptide quantification.
Nahnsen S, Bielow C, Reinert K, Kohlbacher O. Nahnsen S, et al. Among authors: reinert k. Mol Cell Proteomics. 2013 Mar;12(3):549-56. doi: 10.1074/mcp.R112.025163. Epub 2012 Dec 17. Mol Cell Proteomics. 2013. PMID: 23250051 Free PMC article. Review.
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild AC, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki EP, O'Toole ÁN, Ontiveros-Palacios N, Petrov AI, Rangel-Pineros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M. Hufsky F, et al. Among authors: reinert k. Brief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232. Brief Bioinform. 2021. PMID: 33147627 Free PMC article. Review.
Flexbar 3.0 - SIMD and multicore parallelization.
Roehr JT, Dieterich C, Reinert K. Roehr JT, et al. Among authors: reinert k. Bioinformatics. 2017 Sep 15;33(18):2941-2942. doi: 10.1093/bioinformatics/btx330. Bioinformatics. 2017. PMID: 28541403
EPIFANY: A Method for Efficient High-Confidence Protein Inference.
Pfeuffer J, Sachsenberg T, Dijkstra TMH, Serang O, Reinert K, Kohlbacher O. Pfeuffer J, et al. Among authors: reinert k. J Proteome Res. 2020 Mar 6;19(3):1060-1072. doi: 10.1021/acs.jproteome.9b00566. Epub 2020 Feb 13. J Proteome Res. 2020. PMID: 31975601 Free PMC article.
Segment-based multiple sequence alignment.
Rausch T, Emde AK, Weese D, Döring A, Notredame C, Reinert K. Rausch T, et al. Among authors: reinert k. Bioinformatics. 2008 Aug 15;24(16):i187-92. doi: 10.1093/bioinformatics/btn281. Bioinformatics. 2008. PMID: 18689823
92 results