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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1961 1
2005 1
2006 1
2007 2
2008 4
2009 6
2010 4
2011 9
2012 12
2013 9
2014 13
2015 9
2016 6
2017 9
2018 6
2019 10
2020 9
2021 7
2022 13
2023 2
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Page 1
What method to use for protein-protein docking?
Porter KA, Desta I, Kozakov D, Vajda S. Porter KA, et al. Among authors: kozakov d. Curr Opin Struct Biol. 2019 Apr;55:1-7. doi: 10.1016/j.sbi.2018.12.010. Epub 2019 Feb 1. Curr Opin Struct Biol. 2019. PMID: 30711743 Free PMC article. Review.
The ClusPro web server for protein-protein docking.
Kozakov D, Hall DR, Xia B, Porter KA, Padhorny D, Yueh C, Beglov D, Vajda S. Kozakov D, et al. Nat Protoc. 2017 Feb;12(2):255-278. doi: 10.1038/nprot.2016.169. Epub 2017 Jan 12. Nat Protoc. 2017. PMID: 28079879 Free PMC article.
Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2.
Hekman RM, Hume AJ, Goel RK, Abo KM, Huang J, Blum BC, Werder RB, Suder EL, Paul I, Phanse S, Youssef A, Alysandratos KD, Padhorny D, Ojha S, Mora-Martin A, Kretov D, Ash PEA, Verma M, Zhao J, Patten JJ, Villacorta-Martin C, Bolzan D, Perea-Resa C, Bullitt E, Hinds A, Tilston-Lunel A, Varelas X, Farhangmehr S, Braunschweig U, Kwan JH, McComb M, Basu A, Saeed M, Perissi V, Burks EJ, Layne MD, Connor JH, Davey R, Cheng JX, Wolozin BL, Blencowe BJ, Wuchty S, Lyons SM, Kozakov D, Cifuentes D, Blower M, Kotton DN, Wilson AA, Mühlberger E, Emili A. Hekman RM, et al. Among authors: kozakov d. Mol Cell. 2020 Dec 17;80(6):1104-1122.e9. doi: 10.1016/j.molcel.2020.11.028. Epub 2020 Nov 19. Mol Cell. 2020. PMID: 33259812 Free PMC article.
Side-chain Packing Using SE(3)-Transformer.
Jindal A, Kotelnikov S, Padhorny D, Kozakov D, Zhu Y, Chowdhury R, Vajda S. Jindal A, et al. Among authors: kozakov d. Pac Symp Biocomput. 2022;27:46-55. Pac Symp Biocomput. 2022. PMID: 34890135 Free PMC article.
Progress toward improved understanding of antibody maturation.
Vajda S, Porter KA, Kozakov D. Vajda S, et al. Among authors: kozakov d. Curr Opin Struct Biol. 2021 Apr;67:226-231. doi: 10.1016/j.sbi.2020.11.008. Epub 2021 Feb 17. Curr Opin Struct Biol. 2021. PMID: 33610066 Free PMC article. Review.
Mapping the binding sites of challenging drug targets.
Wakefield AE, Kozakov D, Vajda S. Wakefield AE, et al. Among authors: kozakov d. Curr Opin Struct Biol. 2022 Aug;75:102396. doi: 10.1016/j.sbi.2022.102396. Epub 2022 May 27. Curr Opin Struct Biol. 2022. PMID: 35636004 Free PMC article. Review.
Allostery in Its Many Disguises: From Theory to Applications.
Wodak SJ, Paci E, Dokholyan NV, Berezovsky IN, Horovitz A, Li J, Hilser VJ, Bahar I, Karanicolas J, Stock G, Hamm P, Stote RH, Eberhardt J, Chebaro Y, Dejaegere A, Cecchini M, Changeux JP, Bolhuis PG, Vreede J, Faccioli P, Orioli S, Ravasio R, Yan L, Brito C, Wyart M, Gkeka P, Rivalta I, Palermo G, McCammon JA, Panecka-Hofman J, Wade RC, Di Pizio A, Niv MY, Nussinov R, Tsai CJ, Jang H, Padhorny D, Kozakov D, McLeish T. Wodak SJ, et al. Among authors: kozakov d. Structure. 2019 Apr 2;27(4):566-578. doi: 10.1016/j.str.2019.01.003. Epub 2019 Feb 7. Structure. 2019. PMID: 30744993 Free PMC article. Review.
Fragments and hot spots in drug discovery.
Vajda S, Whitty A, Kozakov D. Vajda S, et al. Among authors: kozakov d. Oncotarget. 2015 Aug 7;6(22):18740-1. doi: 10.18632/oncotarget.4968. Oncotarget. 2015. PMID: 26300051 Free PMC article. No abstract available.
Sampling and scoring: a marriage made in heaven.
Vajda S, Hall DR, Kozakov D. Vajda S, et al. Among authors: kozakov d. Proteins. 2013 Nov;81(11):1874-84. doi: 10.1002/prot.24343. Epub 2013 Aug 19. Proteins. 2013. PMID: 23775627 Free PMC article. Review.
Lessons from Hot Spot Analysis for Fragment-Based Drug Discovery.
Hall DR, Kozakov D, Whitty A, Vajda S. Hall DR, et al. Among authors: kozakov d. Trends Pharmacol Sci. 2015 Nov;36(11):724-736. doi: 10.1016/j.tips.2015.08.003. Epub 2015 Nov 1. Trends Pharmacol Sci. 2015. PMID: 26538314 Free PMC article. Review.
120 results