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Page 1
Dockground resource for protein recognition studies.
Collins KW, Copeland MM, Kotthoff I, Singh A, Kundrotas PJ, Vakser IA. Collins KW, et al. Among authors: kundrotas pj. Protein Sci. 2022 Dec;31(12):e4481. doi: 10.1002/pro.4481. Protein Sci. 2022. PMID: 36281025 Free PMC article.
GRAMM Web Server for Protein Docking.
Singh A, Copeland MM, Kundrotas PJ, Vakser IA. Singh A, et al. Among authors: kundrotas pj. Methods Mol Biol. 2024;2714:101-112. doi: 10.1007/978-1-0716-3441-7_5. Methods Mol Biol. 2024. PMID: 37676594
DOCKGROUND membrane protein-protein set.
Kotthoff I, Kundrotas PJ, Vakser IA. Kotthoff I, et al. Among authors: kundrotas pj. PLoS One. 2022 May 17;17(5):e0267531. doi: 10.1371/journal.pone.0267531. eCollection 2022. PLoS One. 2022. PMID: 35580077 Free PMC article.
Dockground scoring benchmarks for protein docking.
Kotthoff I, Kundrotas PJ, Vakser IA. Kotthoff I, et al. Among authors: kundrotas pj. Proteins. 2022 Jun;90(6):1259-1266. doi: 10.1002/prot.26306. Epub 2022 Feb 5. Proteins. 2022. PMID: 35072956 Free PMC article.
Dockground: The Resource Expands to Protein-RNA Interactome.
Collins KW, Copeland MM, Kundrotas PJ, Vakser IA. Collins KW, et al. Among authors: kundrotas pj. J Mol Biol. 2025 Feb 15:169014. doi: 10.1016/j.jmb.2025.169014. Online ahead of print. J Mol Biol. 2025. PMID: 39956358 Free article.
Modeling complexes of modeled proteins.
Anishchenko I, Kundrotas PJ, Vakser IA. Anishchenko I, et al. Among authors: kundrotas pj. Proteins. 2017 Mar;85(3):470-478. doi: 10.1002/prot.25183. Epub 2016 Oct 24. Proteins. 2017. PMID: 27701777 Free PMC article.
Structural templates for comparative protein docking.
Anishchenko I, Kundrotas PJ, Tuzikov AV, Vakser IA. Anishchenko I, et al. Among authors: kundrotas pj. Proteins. 2015 Sep;83(9):1563-70. doi: 10.1002/prot.24736. Epub 2015 Jun 13. Proteins. 2015. PMID: 25488330 Free PMC article.
Application of docking methodologies to modeled proteins.
Singh A, Dauzhenka T, Kundrotas PJ, Sternberg MJE, Vakser IA. Singh A, et al. Among authors: kundrotas pj. Proteins. 2020 Sep;88(9):1180-1188. doi: 10.1002/prot.25889. Epub 2020 Mar 20. Proteins. 2020. PMID: 32170770 Free PMC article.
58 results