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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1991 1
1992 1
1995 1
1996 1
2001 1
2002 2
2004 1
2005 1
2006 4
2007 1
2008 1
2009 1
2010 3
2012 3
2013 5
2014 2
2015 4
2016 4
2017 4
2018 7
2019 2
2020 4
2021 3
2022 6
2023 0
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52 results
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DOCKGROUND membrane protein-protein set.
Kotthoff I, Kundrotas PJ, Vakser IA. Kotthoff I, et al. Among authors: kundrotas pj. PLoS One. 2022 May 17;17(5):e0267531. doi: 10.1371/journal.pone.0267531. eCollection 2022. PLoS One. 2022. PMID: 35580077 Free PMC article.
Dockground resource for protein recognition studies.
Collins KW, Copeland MM, Kotthoff I, Singh A, Kundrotas PJ, Vakser IA. Collins KW, et al. Among authors: kundrotas pj. Protein Sci. 2022 Dec;31(12):e4481. doi: 10.1002/pro.4481. Protein Sci. 2022. PMID: 36281025
Dockground scoring benchmarks for protein docking.
Kotthoff I, Kundrotas PJ, Vakser IA. Kotthoff I, et al. Among authors: kundrotas pj. Proteins. 2022 Jun;90(6):1259-1266. doi: 10.1002/prot.26306. Epub 2022 Feb 5. Proteins. 2022. PMID: 35072956
Size of the protein-protein energy funnel in crowded environment.
Jenkins NW, Kundrotas PJ, Vakser IA. Jenkins NW, et al. Among authors: kundrotas pj. Front Mol Biosci. 2022 Nov 8;9:1031225. doi: 10.3389/fmolb.2022.1031225. eCollection 2022. Front Mol Biosci. 2022. PMID: 36425657 Free PMC article.
Modeling complexes of modeled proteins.
Anishchenko I, Kundrotas PJ, Vakser IA. Anishchenko I, et al. Among authors: kundrotas pj. Proteins. 2017 Mar;85(3):470-478. doi: 10.1002/prot.25183. Epub 2016 Oct 24. Proteins. 2017. PMID: 27701777 Free PMC article.
Application of docking methodologies to modeled proteins.
Singh A, Dauzhenka T, Kundrotas PJ, Sternberg MJE, Vakser IA. Singh A, et al. Among authors: kundrotas pj. Proteins. 2020 Sep;88(9):1180-1188. doi: 10.1002/prot.25889. Epub 2020 Mar 20. Proteins. 2020. PMID: 32170770 Free PMC article.
Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment.
Lensink MF, Brysbaert G, Mauri T, Nadzirin N, Velankar S, Chaleil RAG, Clarence T, Bates PA, Kong R, Liu B, Yang G, Liu M, Shi H, Lu X, Chang S, Roy RS, Quadir F, Liu J, Cheng J, Antoniak A, Czaplewski C, Giełdoń A, Kogut M, Lipska AG, Liwo A, Lubecka EA, Maszota-Zieleniak M, Sieradzan AK, Ślusarz R, Wesołowski PA, Zięba K, Del Carpio Muñoz CA, Ichiishi E, Harmalkar A, Gray JJ, Bonvin AMJJ, Ambrosetti F, Vargas Honorato R, Jandova Z, Jiménez-García B, Koukos PI, Van Keulen S, Van Noort CW, Réau M, Roel-Touris J, Kotelnikov S, Padhorny D, Porter KA, Alekseenko A, Ignatov M, Desta I, Ashizawa R, Sun Z, Ghani U, Hashemi N, Vajda S, Kozakov D, Rosell M, Rodríguez-Lumbreras LA, Fernandez-Recio J, Karczynska A, Grudinin S, Yan Y, Li H, Lin P, Huang SY, Christoffer C, Terashi G, Verburgt J, Sarkar D, Aderinwale T, Wang X, Kihara D, Nakamura T, Hanazono Y, Gowthaman R, Guest JD, Yin R, Taherzadeh G, Pierce BG, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Sun Y, Zhu S, Shen Y, Park T, Woo H, Yang J, Kwon S, Won J, Seok C, Kiyota Y, Kobayashi S, Harada Y, Takeda-Shitaka M, Kundrotas PJ, Singh A, Vakser IA, Dapkūnas J, Olechnovič K, Venclovas Č, Duan R, Qiu L, Xu X, Zhang S, Zou X, Wodak SJ. Lensink MF, et al. Among authors: kundrotas pj. Proteins. 2021 Dec;89(12):1800-1823. doi: 10.1002/prot.26222. Epub 2021 Sep 13. Proteins. 2021. PMID: 34453465 Free PMC article.
Template-Based Modeling of Protein-RNA Interactions.
Zheng J, Kundrotas PJ, Vakser IA, Liu S. Zheng J, et al. Among authors: kundrotas pj. PLoS Comput Biol. 2016 Sep 23;12(9):e1005120. doi: 10.1371/journal.pcbi.1005120. eCollection 2016 Sep. PLoS Comput Biol. 2016. PMID: 27662342 Free PMC article.
52 results