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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses.

Guo J, Bolduc B, Zayed AA, Varsani A, Dominguez-Huerta G, Delmont TO, Pratama AA, Gazitúa MC, Vik D, Sullivan MB, Roux S. Guo J, et al. Among authors: gazitua mc. Microbiome. 2021 Feb 1;9(1):37. doi: 10.1186/s40168-020-00990-y. Microbiome. 2021. PMID: 33522966 Free PMC article.

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Glacier ice archives nearly 15,000-year-old microbes and phages.

Zhong ZP, Tian F, Roux S, Gazitúa MC, Solonenko NE, Li YF, Davis ME, Van Etten JL, Mosley-Thompson E, Rich VI, Sullivan MB, Thompson LG. Zhong ZP, et al. Among authors: gazitua mc. Microbiome. 2021 Jul 20;9(1):160. doi: 10.1186/s40168-021-01106-w. Microbiome. 2021. PMID: 34281625 Free PMC article.

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Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters.

Gazitúa MC, Vik DR, Roux S, Gregory AC, Bolduc B, Widner B, Mulholland MR, Hallam SJ, Ulloa O, Sullivan MB. Gazitúa MC, et al. ISME J. 2021 Apr;15(4):981-998. doi: 10.1038/s41396-020-00825-6. Epub 2020 Nov 16. ISME J. 2021. PMID: 33199808 Free PMC article.

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Genome-resolved viral ecology in a marine oxygen minimum zone.

Vik D, Gazitúa MC, Sun CL, Zayed AA, Aldunate M, Mulholland MR, Ulloa O, Sullivan MB. Vik D, et al. Environ Microbiol. 2021 Jun;23(6):2858-2874. doi: 10.1111/1462-2920.15313. Epub 2020 Nov 23. Environ Microbiol. 2021. PMID: 33185964

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The microbial community from the early-plant colonizer (Baccharis linearis) is required for plant establishment on copper mine tailings.

Gazitúa MC, Morgante V, Poupin MJ, Ledger T, Rodríguez-Valdecantos G, Herrera C, Del Carmen González-Chávez M, Ginocchio R, González B. Gazitúa MC, et al. Sci Rep. 2021 May 17;11(1):10448. doi: 10.1038/s41598-021-89769-1. Sci Rep. 2021. PMID: 34001948 Free PMC article.

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DRAM for distilling microbial metabolism to automate the curation of microbiome function.

Shaffer M, Borton MA, McGivern BB, Zayed AA, La Rosa SL, Solden LM, Liu P, Narrowe AB, Rodríguez-Ramos J, Bolduc B, Gazitúa MC, Daly RA, Smith GJ, Vik DR, Pope PB, Sullivan MB, Roux S, Wrighton KC. Shaffer M, et al. Among authors: gazitua mc. Nucleic Acids Res. 2020 Sep 18;48(16):8883-8900. doi: 10.1093/nar/gkaa621. Nucleic Acids Res. 2020. PMID: 32766782 Free PMC article.

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Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts.

Bachy C, Yung CCM, Needham DM, Gazitúa MC, Roux S, Limardo AJ, Choi CJ, Jorgens DM, Sullivan MB, Worden AZ. Bachy C, et al. ISME J. 2021 Nov;15(11):3129-3147. doi: 10.1038/s41396-021-00989-9. Epub 2021 May 11. ISME J. 2021. PMID: 33972727 Free PMC article.

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Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation.

Pratama AA, Bolduc B, Zayed AA, Zhong ZP, Guo J, Vik DR, Gazitúa MC, Wainaina JM, Roux S, Sullivan MB. Pratama AA, et al. PeerJ. 2021 Jun 14;9:e11447. doi: 10.7717/peerj.11447. eCollection 2021. PeerJ. 2021. PMID: 34178438 Free PMC article.

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Characterization of pHeBE7, an IncFII-type virulence-resistance plasmid carrying bla_CTX-M-98b, bla_TEM-1, and rmtB genes, detected in Escherichia coli from a chicken isolate in China.

Yang YX, Yang YQ, Lei CW, Liu BH, Jiang W, Wang HN, Gazitúa MC, Zhang AY. Yang YX, et al. Plasmid. 2017 Jul;92:37-42. doi: 10.1016/j.plasmid.2017.07.001. Epub 2017 Jul 6. Plasmid. 2017. PMID: 28688673

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Whole-Genome Sequences of Phages p000v and p000y, Which Infect the Bacterial Pathogen Shiga-Toxigenic Escherichia coli.

Howard-Varona C, Vik DR, Solonenko NE, Gazitua MC, Hobbs Z, Honaker RW, Kinkhabwala AA, Sullivan MB. Howard-Varona C, et al. Among authors: gazitua mc. Microbiol Resour Announc. 2018 Nov 21;7(20):e01400-18. doi: 10.1128/MRA.01400-18. eCollection 2018 Nov. Microbiol Resour Announc. 2018. PMID: 30533810 Free PMC article.

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