Maciej Pawel Ciemny - Search Results

Year	Number of Results
2016	1
2017	3
2018	1
2019	4
2022	0

1

Highly Flexible Protein-Peptide Docking Using CABS-Dock.

Ciemny MP, Kurcinski M, Kozak KJ, Kolinski A, Kmiecik S. Ciemny MP, et al. Methods Mol Biol. 2017;1561:69-94. doi: 10.1007/978-1-4939-6798-8_6. Methods Mol Biol. 2017. PMID: 28236234

2

Protein-peptide docking using CABS-dock and contact information.

Blaszczyk M, Ciemny MP, Kolinski A, Kurcinski M, Kmiecik S. Blaszczyk M, et al. Among authors: ciemny mp. Brief Bioinform. 2019 Nov 27;20(6):2299-2305. doi: 10.1093/bib/bby080. Brief Bioinform. 2019. PMID: 30247502 Free PMC article.

3

CABS-dock standalone: a toolbox for flexible protein-peptide docking.

Kurcinski M, Pawel Ciemny M, Oleniecki T, Kuriata A, Badaczewska-Dawid AE, Kolinski A, Kmiecik S. Kurcinski M, et al. Among authors: pawel ciemny m. Bioinformatics. 2019 Oct 15;35(20):4170-4172. doi: 10.1093/bioinformatics/btz185. Bioinformatics. 2019. PMID: 30865258 Free PMC article.

4

Modeling of Disordered Protein Structures Using Monte Carlo Simulations and Knowledge-Based Statistical Force Fields.

Ciemny MP, Badaczewska-Dawid AE, Pikuzinska M, Kolinski A, Kmiecik S. Ciemny MP, et al. Int J Mol Sci. 2019 Jan 31;20(3):606. doi: 10.3390/ijms20030606. Int J Mol Sci. 2019. PMID: 30708941 Free PMC article. Review.

5

CABS-flex standalone: a simulation environment for fast modeling of protein flexibility.

Kurcinski M, Oleniecki T, Ciemny MP, Kuriata A, Kolinski A, Kmiecik S. Kurcinski M, et al. Among authors: ciemny mp. Bioinformatics. 2019 Feb 15;35(4):694-695. doi: 10.1093/bioinformatics/bty685. Bioinformatics. 2019. PMID: 30101282 Free PMC article.

6

Protein-peptide molecular docking with large-scale conformational changes: the p53-MDM2 interaction.

Ciemny MP, Debinski A, Paczkowska M, Kolinski A, Kurcinski M, Kmiecik S. Ciemny MP, et al. Sci Rep. 2016 Dec 1;6:37532. doi: 10.1038/srep37532. Sci Rep. 2016. PMID: 27905468 Free PMC article.

7

A protocol for CABS-dock protein-peptide docking driven by side-chain contact information.

Kurcinski M, Blaszczyk M, Ciemny MP, Kolinski A, Kmiecik S. Kurcinski M, et al. Among authors: ciemny mp. Biomed Eng Online. 2017 Aug 18;16(Suppl 1):73. doi: 10.1186/s12938-017-0363-6. Biomed Eng Online. 2017. PMID: 28830545 Free PMC article.

8

Modeling EphB4-EphrinB2 protein-protein interaction using flexible docking of a short linear motif.

Ciemny MP, Kurcinski M, Blaszczyk M, Kolinski A, Kmiecik S. Ciemny MP, et al. Biomed Eng Online. 2017 Aug 18;16(Suppl 1):71. doi: 10.1186/s12938-017-0362-7. Biomed Eng Online. 2017. PMID: 28830442 Free PMC article.

9

CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures.

Kuriata A, Gierut AM, Oleniecki T, Ciemny MP, Kolinski A, Kurcinski M, Kmiecik S. Kuriata A, et al. Among authors: ciemny mp. Nucleic Acids Res. 2018 Jul 2;46(W1):W338-W343. doi: 10.1093/nar/gky356. Nucleic Acids Res. 2018. PMID: 29762700 Free PMC article.

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