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102 results

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Page 1
SARS-CoV-2 evolution on a dynamic immune landscape.
Raharinirina NA, Gubela N, Börnigen D, Smith MR, Oh DY, Budt M, Mache C, Schillings C, Fuchs S, Dürrwald R, Wolff T, Hölzer M, Paraskevopoulou S, von Kleist M. Raharinirina NA, et al. Among authors: holzer m. Nature. 2025 Mar;639(8053):196-204. doi: 10.1038/s41586-024-08477-8. Epub 2025 Jan 29. Nature. 2025. PMID: 39880955 Free PMC article.
Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny.
Hunt M, Hinrichs AS, Anderson D, Karim L, Dearlove BL, Knaggs J, Constantinides B, Fowler PW, Rodger G, Street T, Lumley S, Webster H, Sanderson T, Ruis C, Kotzen B, de Maio N, Amenga-Etego LN, Amuzu DSY, Avaro M, Awandare GA, Ayivor-Djanie R, Barkham T, Bashton M, Batty EM, Bediako Y, De Belder D, Benedetti E, Bergthaler A, Boers SA, Campos J, Carr RAA, Chen YYC, Cuba F, Dattero ME, Dejnirattisai W, Dilthey A, Duedu KO, Endler L, Engelmann I, Francisco NM, Fuchs J, Gnimpieba EZ, Groc S, Gyamfi J, Heemskerk D, Houwaart T, Hsiao NY, Huska M, Hölzer M, Iranzadeh A, Jarva H, Jeewandara C, Jolly B, Joseph R, Kant R, Ki KKK, Kurkela S, Lappalainen M, Lataretu M, Lemieux J, Liu C, Malavige GN, Mashe T, Mongkolsapaya J, Montes B, Mora JAM, Morang'a CM, Mvula B, Nagarajan N, Nelson A, Ngoi JM, da Paixão JP, Panning M, Poklepovich T, Quashie PK, Ranasinghe D, Russo M, San JE, Sanderson ND, Scaria V, Screaton G, Sessions OM, Sironen T, Sisay A, Smith D, Smura T, Supasa P, Suphavilai C, Swann J, Tegally H, Tegomoh B, Vapalahti O, Walker A, Wilkinson RJ, Williamson C, Zair X; IMSSC2 Laboratory Network Consortium; de Oliveira T, Peto TE, Crook D, Corbett-Detig R, Iqbal Z. Hunt M, et al. Among authors: holzer m. bioRxiv [Preprint]. 2024 Nov 5:2024.04.29.591666. doi: 10.1101/2024.04.29.591666. bioRxiv. 2024. PMID: 38746185 Free PMC article. Preprint.
varVAMP: degenerate primer design for tiled full genome sequencing and qPCR.
Fuchs J, Kleine J, Schemmerer M, Kreibich J, Maier W, Battur N, Krannich T, Sedaghatjoo S, Jaki L, Maks A, Boehm C, Wilhelm C, Schulze J, Mache C, Berger E, Panajotov J, Arnold L, Grüning B, Bauswein M, Böttcher S, Johne R, Wenzel J, Hölzer M, Panning M. Fuchs J, et al. Among authors: holzer m. Nat Commun. 2025 May 31;16(1):5067. doi: 10.1038/s41467-025-60175-9. Nat Commun. 2025. PMID: 40449995 Free PMC article.
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research.
Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Arighi C, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn RD, Fritz A, Fuchs S, Hattab G, Hauschild AC, Heider D, Hoffmann M, Hölzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kühnert D, Lasso G, Libin P, List M, Löchel HF, Martin MJ, Martin R, Matschinske J, McHardy AC, Mendes P, Mistry J, Navratil V, Nawrocki EP, O'Toole ÁN, Ontiveros-Palacios N, Petrov AI, Rangel-Pineros G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson DL, Sadegh S, Singer JB, Theys K, Upton C, Welzel M, Williams L, Marz M. Hufsky F, et al. Among authors: holzer m. Brief Bioinform. 2021 Mar 22;22(2):642-663. doi: 10.1093/bib/bbaa232. Brief Bioinform. 2021. PMID: 33147627 Free PMC article. Review.
A multicenter study on accuracy and reproducibility of nanopore sequencing-based genotyping of bacterial pathogens.
Dabernig-Heinz J, Lohde M, Hölzer M, Cabal A, Conzemius R, Brandt C, Kohl M, Halbedel S, Hyden P, Fischer MA, Pietzka A, Daza B, Idelevich EA, Stöger A, Becker K, Fuchs S, Ruppitsch W, Steinmetz I, Kohler C, Wagner GE. Dabernig-Heinz J, et al. Among authors: holzer m. J Clin Microbiol. 2024 Sep 11;62(9):e0062824. doi: 10.1128/jcm.00628-24. Epub 2024 Aug 19. J Clin Microbiol. 2024. PMID: 39158309 Free PMC article.
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.
Wittig A, Miranda F, Hölzer M, Altenburg T, Bartoszewicz JM, Beyvers S, Dieckmann MA, Genske U, Giese SH, Nowicka M, Richard H, Schiebenhoefer H, Schmachtenberg AJ, Sieben P, Tang M, Tembrockhaus J, Renard BY, Fuchs S. Wittig A, et al. Among authors: holzer m. Bioinformatics. 2022 Sep 2;38(17):4223-4225. doi: 10.1093/bioinformatics/btac411. Bioinformatics. 2022. PMID: 35799354
102 results