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2017 1
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2019 3
2020 3
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Page 1
Untargeted Metabolomics Reveals Molecular Effects of Ketogenic Diet on Healthy and Tumor Xenograft Mouse Models.
Licha D, Vidali S, Aminzadeh-Gohari S, Alka O, Breitkreuz L, Kohlbacher O, Reischl RJ, Feichtinger RG, Kofler B, Huber CG. Licha D, et al. Among authors: alka o. Int J Mol Sci. 2019 Aug 8;20(16):3873. doi: 10.3390/ijms20163873. Int J Mol Sci. 2019. PMID: 31398922 Free PMC article.
Current Challenges in Plant Eco-Metabolomics.
Peters K, Worrich A, Weinhold A, Alka O, Balcke G, Birkemeyer C, Bruelheide H, Calf OW, Dietz S, Dührkop K, Gaquerel E, Heinig U, Kücklich M, Macel M, Müller C, Poeschl Y, Pohnert G, Ristok C, Rodríguez VM, Ruttkies C, Schuman M, Schweiger R, Shahaf N, Steinbeck C, Tortosa M, Treutler H, Ueberschaar N, Velasco P, Weiß BM, Widdig A, Neumann S, Dam NMV. Peters K, et al. Among authors: alka o. Int J Mol Sci. 2018 May 6;19(5):1385. doi: 10.3390/ijms19051385. Int J Mol Sci. 2018. PMID: 29734799 Free PMC article. Review.
OpenMS - A platform for reproducible analysis of mass spectrometry data.
Pfeuffer J, Sachsenberg T, Alka O, Walzer M, Fillbrunn A, Nilse L, Schilling O, Reinert K, Kohlbacher O. Pfeuffer J, et al. Among authors: alka o. J Biotechnol. 2017 Nov 10;261:142-148. doi: 10.1016/j.jbiotec.2017.05.016. Epub 2017 May 27. J Biotechnol. 2017. PMID: 28559010 Free article. Review.
mzTab-M: A Data Standard for Sharing Quantitative Results in Mass Spectrometry Metabolomics.
Hoffmann N, Rein J, Sachsenberg T, Hartler J, Haug K, Mayer G, Alka O, Dayalan S, Pearce JTM, Rocca-Serra P, Qi D, Eisenacher M, Perez-Riverol Y, Vizcaíno JA, Salek RM, Neumann S, Jones AR. Hoffmann N, et al. Among authors: alka o. Anal Chem. 2019 Mar 5;91(5):3302-3310. doi: 10.1021/acs.analchem.8b04310. Epub 2019 Feb 13. Anal Chem. 2019. PMID: 30688441 Free PMC article.
Food fingerprinting: Mass spectrometric determination of the cocoa shell content (Theobroma cacao L.) in cocoa products by HPLC-QTOF-MS.
Cain N, Alka O, Segelke T, von Wuthenau K, Kohlbacher O, Fischer M. Cain N, et al. Among authors: alka o. Food Chem. 2019 Nov 15;298:125013. doi: 10.1016/j.foodchem.2019.125013. Epub 2019 Jun 24. Food Chem. 2019. PMID: 31260999
Metabolomics Data Processing Using OpenMS.
Rurik M, Alka O, Aicheler F, Kohlbacher O. Rurik M, et al. Among authors: alka o. Methods Mol Biol. 2020;2104:49-60. doi: 10.1007/978-1-0716-0239-3_4. Methods Mol Biol. 2020. PMID: 31953812
Feature-based molecular networking in the GNPS analysis environment.
Nothias LF, Petras D, Schmid R, Dührkop K, Rainer J, Sarvepalli A, Protsyuk I, Ernst M, Tsugawa H, Fleischauer M, Aicheler F, Aksenov AA, Alka O, Allard PM, Barsch A, Cachet X, Caraballo-Rodriguez AM, Da Silva RR, Dang T, Garg N, Gauglitz JM, Gurevich A, Isaac G, Jarmusch AK, Kameník Z, Kang KB, Kessler N, Koester I, Korf A, Le Gouellec A, Ludwig M, Martin H C, McCall LI, McSayles J, Meyer SW, Mohimani H, Morsy M, Moyne O, Neumann S, Neuweger H, Nguyen NH, Nothias-Esposito M, Paolini J, Phelan VV, Pluskal T, Quinn RA, Rogers S, Shrestha B, Tripathi A, van der Hooft JJJ, Vargas F, Weldon KC, Witting M, Yang H, Zhang Z, Zubeil F, Kohlbacher O, Böcker S, Alexandrov T, Bandeira N, Wang M, Dorrestein PC. Nothias LF, et al. Among authors: alka o. Nat Methods. 2020 Sep;17(9):905-908. doi: 10.1038/s41592-020-0933-6. Epub 2020 Aug 24. Nat Methods. 2020. PMID: 32839597
Phosphoproteomics of short-term hedgehog signaling in human medulloblastoma cells.
Scheidt T, Alka O, Gonczarowska-Jorge H, Gruber W, Rathje F, Dell'Aica M, Rurik M, Kohlbacher O, Zahedi RP, Aberger F, Huber CG. Scheidt T, et al. Among authors: alka o. Cell Commun Signal. 2020 Jun 23;18(1):99. doi: 10.1186/s12964-020-00591-0. Cell Commun Signal. 2020. PMID: 32576205 Free PMC article.
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