Oscar Dias - Search Results

Year	Number of Results
2006	1
2011	1
2012	1
2013	1
2014	2
2015	2
2016	3
2017	4
2018	3
2019	5
2020	3
2021	3
2022	3

1

Predicting promoters in phage genomes using PhagePromoter.

Sampaio M, Rocha M, Oliveira H, Dias O. Sampaio M, et al. Among authors: dias o. Bioinformatics. 2019 Dec 15;35(24):5301-5302. doi: 10.1093/bioinformatics/btz580. Bioinformatics. 2019. PMID: 31359029

2

OrtSuite: from genomes to prediction of microbial interactions within targeted ecosystem processes.

Saraiva JP, Bartholomäus A, Kallies R, Gomes M, Bicalho M, Coelho Kasmanas J, Vogt C, Chatzinotas A, Stadler P, Dias O, Nunes da Rocha U. Saraiva JP, et al. Among authors: dias o. Life Sci Alliance. 2021 Sep 27;4(12):e202101167. doi: 10.26508/lsa.202101167. Print 2021 Dec. Life Sci Alliance. 2021. PMID: 34580179 Free PMC article.

3

Reconstructing High-Quality Large-Scale Metabolic Models with merlin.

Dias O, Rocha M, Ferreira EC, Rocha I. Dias O, et al. Methods Mol Biol. 2018;1716:1-36. doi: 10.1007/978-1-4939-7528-0_1. Methods Mol Biol. 2018. PMID: 29222747

4

Genome-Wide Semi-Automated Annotation of Transporter Systems.

Dias O, Gomes D, Vilaca P, Cardoso J, Rocha M, Ferreira EC, Rocha I. Dias O, et al. IEEE/ACM Trans Comput Biol Bioinform. 2017 Mar-Apr;14(2):443-456. doi: 10.1109/TCBB.2016.2527647. Epub 2016 Feb 11. IEEE/ACM Trans Comput Biol Bioinform. 2017. PMID: 26887005 Free article.

5

A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation.

Cruz F, Faria JP, Rocha M, Rocha I, Dias O. Cruz F, et al. Among authors: dias o. Biochem Soc Trans. 2020 Oct 30;48(5):1889-1903. doi: 10.1042/BST20190840. Biochem Soc Trans. 2020. PMID: 32940659 Review.

6

A kinetic model of the central carbon metabolism for acrylic acid production in Escherichia coli.

Oliveira A, Rodrigues J, Ferreira EC, Rodrigues L, Dias O. Oliveira A, et al. Among authors: dias o. PLoS Comput Biol. 2021 Mar 8;17(3):e1008704. doi: 10.1371/journal.pcbi.1008704. eCollection 2021 Mar. PLoS Comput Biol. 2021. PMID: 33684125 Free PMC article.

7

Insights into the genome architecture and evolution of Shiga toxin encoding bacteriophages of Escherichia coli.

Pinto G, Sampaio M, Dias O, Almeida C, Azeredo J, Oliveira H. Pinto G, et al. Among authors: dias o. BMC Genomics. 2021 May 19;22(1):366. doi: 10.1186/s12864-021-07685-0. BMC Genomics. 2021. PMID: 34011288 Free PMC article.

8

Staphylococci phages display vast genomic diversity and evolutionary relationships.

Oliveira H, Sampaio M, Melo LDR, Dias O, Pope WH, Hatfull GF, Azeredo J. Oliveira H, et al. Among authors: dias o. BMC Genomics. 2019 May 9;20(1):357. doi: 10.1186/s12864-019-5647-8. BMC Genomics. 2019. PMID: 31072320 Free PMC article.

9

Exploring synergies between plant metabolic modelling and machine learning.

Sampaio M, Rocha M, Dias O. Sampaio M, et al. Among authors: dias o. Comput Struct Biotechnol J. 2022 Apr 16;20:1885-1900. doi: 10.1016/j.csbj.2022.04.016. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 35521559 Free PMC article. Review.

10

Reconstructing genome-scale metabolic models with merlin.

Dias O, Rocha M, Ferreira EC, Rocha I. Dias O, et al. Nucleic Acids Res. 2015 Apr 30;43(8):3899-910. doi: 10.1093/nar/gkv294. Epub 2015 Apr 6. Nucleic Acids Res. 2015. PMID: 25845595 Free PMC article.

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