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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1999 1
2001 1
2003 2
2005 2
2006 1
2007 2
2008 4
2009 4
2010 4
2011 3
2012 1
2013 8
2014 8
2015 9
2016 9
2017 12
2018 10
2019 9
2020 7
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92 results
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Page 1
Model-driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation.
van der Ark KCH, Aalvink S, Suarez-Diez M, Schaap PJ, de Vos WM, Belzer C. van der Ark KCH, et al. Among authors: schaap pj. Microb Biotechnol. 2018 May;11(3):476-485. doi: 10.1111/1751-7915.13033. Epub 2018 Jan 26. Microb Biotechnol. 2018. PMID: 29377524 Free PMC article.
Genome-Scale Model and Omics Analysis of Metabolic Capacities of Akkermansia muciniphila Reveal a Preferential Mucin-Degrading Lifestyle.
Ottman N, Davids M, Suarez-Diez M, Boeren S, Schaap PJ, Martins Dos Santos VAP, Smidt H, Belzer C, de Vos WM. Ottman N, et al. Among authors: schaap pj. Appl Environ Microbiol. 2017 Aug 31;83(18):e01014-17. doi: 10.1128/AEM.01014-17. Print 2017 Sep 15. Appl Environ Microbiol. 2017. PMID: 28687644 Free PMC article.
Deciphering the trophic interaction between Akkermansia muciniphila and the butyrogenic gut commensal Anaerostipes caccae using a metatranscriptomic approach.
Chia LW, Hornung BVH, Aalvink S, Schaap PJ, de Vos WM, Knol J, Belzer C. Chia LW, et al. Among authors: schaap pj. Antonie Van Leeuwenhoek. 2018 Jun;111(6):859-873. doi: 10.1007/s10482-018-1040-x. Epub 2018 Feb 19. Antonie Van Leeuwenhoek. 2018. PMID: 29460206 Free PMC article.
Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.
Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, van Dijck PW, Hofmann G, Lasure LL, Magnuson JK, Menke H, Meijer M, Meijer SL, Nielsen JB, Nielsen ML, van Ooyen AJ, Pel HJ, Poulsen L, Samson RA, Stam H, Tsang A, van den Brink JM, Atkins A, Aerts A, Shapiro H, Pangilinan J, Salamov A, Lou Y, Lindquist E, Lucas S, Grimwood J, Grigoriev IV, Kubicek CP, Martinez D, van Peij NN, Roubos JA, Nielsen J, Baker SE. Andersen MR, et al. Among authors: schaap pj. Genome Res. 2011 Jun;21(6):885-97. doi: 10.1101/gr.112169.110. Epub 2011 May 4. Genome Res. 2011. PMID: 21543515 Free PMC article.
Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88.
Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wösten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H. Pel HJ, et al. Among authors: schaap pj. Nat Biotechnol. 2007 Feb;25(2):221-31. doi: 10.1038/nbt1282. Epub 2007 Jan 28. Nat Biotechnol. 2007. PMID: 17259976
Studying microbial functionality within the gut ecosystem by systems biology.
Hornung B, Martins Dos Santos VAP, Smidt H, Schaap PJ. Hornung B, et al. Among authors: schaap pj. Genes Nutr. 2018 Mar 6;13:5. doi: 10.1186/s12263-018-0594-6. eCollection 2018. Genes Nutr. 2018. PMID: 29556373 Free PMC article. Review.
Regulation of Three Virulence Strategies of Mycobacterium tuberculosis: A Success Story.
Zondervan NA, van Dam JCJ, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M. Zondervan NA, et al. Among authors: schaap pj. Int J Mol Sci. 2018 Jan 24;19(2):347. doi: 10.3390/ijms19020347. Int J Mol Sci. 2018. PMID: 29364195 Free PMC article. Review.
MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, Feist AM, Fengos G, Fleming RMT, García-Jiménez B, Hatzimanikatis V, van Helvoirt W, Henry CS, Hermjakob H, Herrgård MJ, Kaafarani A, Kim HU, King Z, Klamt S, Klipp E, Koehorst JJ, König M, Lakshmanan M, Lee DY, Lee SY, Lee S, Lewis NE, Liu F, Ma H, Machado D, Mahadevan R, Maia P, Mardinoglu A, Medlock GL, Monk JM, Nielsen J, Nielsen LK, Nogales J, Nookaew I, Palsson BO, Papin JA, Patil KR, Poolman M, Price ND, Resendis-Antonio O, Richelle A, Rocha I, Sánchez BJ, Schaap PJ, Malik Sheriff RS, Shoaie S, Sonnenschein N, Teusink B, Vilaça P, Vik JO, Wodke JAH, Xavier JC, Yuan Q, Zakhartsev M, Zhang C. Lieven C, et al. Among authors: schaap pj. Nat Biotechnol. 2020 Mar;38(3):272-276. doi: 10.1038/s41587-020-0446-y. Nat Biotechnol. 2020. PMID: 32123384 Free PMC article. No abstract available.
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles.
Koehorst JJ, van Dam JCJ, Saccenti E, Martins Dos Santos VAP, Suarez-Diez M, Schaap PJ. Koehorst JJ, et al. Among authors: schaap pj. Bioinformatics. 2018 Apr 15;34(8):1401-1403. doi: 10.1093/bioinformatics/btx767. Bioinformatics. 2018. PMID: 29186322 Free PMC article.
Designing Eukaryotic Gene Expression Regulation Using Machine Learning.
de Jongh RPH, van Dijk ADJ, Julsing MK, Schaap PJ, de Ridder D. de Jongh RPH, et al. Among authors: schaap pj. Trends Biotechnol. 2020 Feb;38(2):191-201. doi: 10.1016/j.tibtech.2019.07.007. Epub 2019 Aug 17. Trends Biotechnol. 2020. PMID: 31431299 Review.
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