Raquel Cardoso de Melo-Minardi - Search Results

Year	Number of Results
2014	1
2016	1
2019	3
2020	2
2021	2
2022	3
2023	1

1

Protein structural bioinformatics: An overview.

Paiva VA, Gomes IS, Monteiro CR, Mendonça MV, Martins PM, Santana CA, Gonçalves-Almeida V, Izidoro SC, Melo-Minardi RC, Silveira SA. Paiva VA, et al. Among authors: melo minardi rc. Comput Biol Med. 2022 Aug;147:105695. doi: 10.1016/j.compbiomed.2022.105695. Epub 2022 Jun 18. Comput Biol Med. 2022. PMID: 35785665 Review.

2

Introducing Programming Skills for Life Science Students.

Mariano D, Martins P, Helene Santos L, de Melo-Minardi RC. Mariano D, et al. Among authors: de melo minardi rc. Biochem Mol Biol Educ. 2019 May;47(3):288-295. doi: 10.1002/bmb.21230. Epub 2019 Mar 12. Biochem Mol Biol Educ. 2019. PMID: 30860646 Free article.

3

VTR: A Web Tool for Identifying Analogous Contacts on Protein Structures and Their Complexes.

Pimentel V, Mariano D, Cantão LXS, Bastos LL, Fischer P, de Lima LHF, Fassio AV, de Melo-Minardi RC. Pimentel V, et al. Among authors: de melo minardi rc. Front Bioinform. 2021 Nov 8;1:730350. doi: 10.3389/fbinf.2021.730350. eCollection 2021. Front Bioinform. 2021. PMID: 36303745 Free PMC article.

4

Computational prediction of potential inhibitors for SARS-COV-2 main protease based on machine learning, docking, MM-PBSA calculations, and metadynamics.

Gomes IS, Santana CA, Marcolino LS, Lima LHF, Melo-Minardi RC, Dias RS, de Paula SO, Silveira SA. Gomes IS, et al. Among authors: melo minardi rc. PLoS One. 2022 Apr 22;17(4):e0267471. doi: 10.1371/journal.pone.0267471. eCollection 2022. PLoS One. 2022. PMID: 35452494 Free PMC article.

5

Conformational flexibility correlates with glucose tolerance for point mutations in β-glucosidases - a computational study.

Lima LHF, Fernandez-Quintéro ML, Rocha REO, Mariano DCB, de Melo-Minardi RC, Liedl KR. Lima LHF, et al. Among authors: de melo minardi rc. J Biomol Struct Dyn. 2021 Mar;39(5):1621-1634. doi: 10.1080/07391102.2020.1734484. Epub 2020 Mar 10. J Biomol Struct Dyn. 2021. PMID: 32107974

6

Glutantβase: a database for improving the rational design of glucose-tolerant β-glucosidases.

Mariano D, Pantuza N, Santos LH, Rocha REO, de Lima LHF, Bleicher L, de Melo-Minardi RC. Mariano D, et al. Among authors: de melo minardi rc. BMC Mol Cell Biol. 2020 Jul 1;21(1):50. doi: 10.1186/s12860-020-00293-y. BMC Mol Cell Biol. 2020. PMID: 32611314 Free PMC article.

7

Molecular Dynamics Gives New Insights into the Glucose Tolerance and Inhibition Mechanisms on β-Glucosidases.

Costa LSC, Mariano DCB, Rocha REO, Kraml J, Silveira CHD, Liedl KR, de Melo-Minardi RC, Lima LHF. Costa LSC, et al. Among authors: de melo minardi rc. Molecules. 2019 Sep 4;24(18):3215. doi: 10.3390/molecules24183215. Molecules. 2019. PMID: 31487855 Free PMC article.

8

A Computational Method to Propose Mutations in Enzymes Based on Structural Signature Variation (SSV).

Mariano DCB, Santos LH, Machado KDS, Werhli AV, de Lima LHF, de Melo-Minardi RC. Mariano DCB, et al. Among authors: de melo minardi rc. Int J Mol Sci. 2019 Jan 15;20(2):333. doi: 10.3390/ijms20020333. Int J Mol Sci. 2019. PMID: 30650542 Free PMC article.

9

ENZYMAP: exploiting protein annotation for modeling and predicting EC number changes in UniProt/Swiss-Prot.

Silveira Sde A, de Melo-Minardi RC, da Silveira CH, Santoro MM, Meira W Jr. Silveira Sde A, et al. Among authors: de melo minardi rc. PLoS One. 2014 Feb 19;9(2):e89162. doi: 10.1371/journal.pone.0089162. eCollection 2014. PLoS One. 2014. PMID: 24586563 Free PMC article.

10

Thermostabilizing mechanisms of canonical single amino acid substitutions at a GH1 β-glucosidase probed by multiple MD and computational approaches.

Rocha REO, Mariano DCB, Almeida TS, CorrêaCosta LS, Fischer PHC, Santos LH, Caffarena ER, da Silveira CH, Lamp LM, Fernandez-Quintero ML, Liedl KR, de Melo-Minardi RC, de Lima LHF. Rocha REO, et al. Among authors: de melo minardi rc. Proteins. 2023 Feb;91(2):218-236. doi: 10.1002/prot.26424. Epub 2022 Oct 10. Proteins. 2023. PMID: 36114781

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