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Stingray epidermal microbiomes are species-specific with local adaptations.
Kerr EN, Papudeshi B, Haggerty M, Wild N, Goodman AZ, Lima LFO, Hesse RD, Skye A, Mallawaarachchi V, Johri S, Parker S, Dinsdale EA. Kerr EN, et al. Among authors: hesse rd. Front Microbiol. 2023 Mar 2;14:1031711. doi: 10.3389/fmicb.2023.1031711. eCollection 2023. Front Microbiol. 2023. PMID: 36937279 Free PMC article.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: hesse rd. Bioinformatics. 2023 Oct 3;39(10):btad586. doi: 10.1093/bioinformatics/btad586. Bioinformatics. 2023. PMID: 37738590 Free PMC article.
Phables: from fragmented assemblies to high-quality bacteriophage genomes.
Mallawaarachchi V, Roach MJ, Decewicz P, Papudeshi B, Giles SK, Grigson SR, Bouras G, Hesse RD, Inglis LK, Hutton ALK, Dinsdale EA, Edwards RA. Mallawaarachchi V, et al. Among authors: hesse rd. bioRxiv [Preprint]. 2023 Sep 11:2023.04.04.535632. doi: 10.1101/2023.04.04.535632. bioRxiv. 2023. Update in: Bioinformatics. 2023 Oct 3;39(10):btad586. doi: 10.1093/bioinformatics/btad586. PMID: 37066369 Free PMC article. Updated. Preprint.
Microbial Ecological Signatures Predict Pathogen Emergence and Multidrug Resistance in Cystic Fibrosis Airways up to a Year in Advance.
Goddard TR, Carlson-Jones JA, Judith M, Ooi CY, Andrew T, Warner MS, John W, Evans IE, Hopkins E, Iredell JR, Jersmann HP, Whiteson KL, Bouras G, Doane MP, Falk NW, Green R, Grigson SR, Mallawaarachchi V, Martin B, Roach MJ, Ryan FJ, Tarasenko A, Papudeshi B, Drigo B, Giles SK, Harker CM, Hesse RD, Hodgson RJ, Hussnain A, Hutton A, Inglis LK, Keneally C, Kerr EN, Liddicoat C, Peddle SD, Watson CD, Yang Q, Decewicz P, Speck PG, Mitchell JG, Dinsdale EA, Edwards RA. Goddard TR, et al. Among authors: hesse rd. medRxiv [Preprint]. 2026 Jan 2:2025.12.28.25342520. doi: 10.64898/2025.12.28.25342520. medRxiv. 2026. PMID: 41503489 Free PMC article. Preprint.