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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2005 1
2010 2
2011 4
2012 3
2013 5
2014 6
2015 2
2016 7
2017 6
2018 5
2019 9
2020 8
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Page 1
Smooth orientation-dependent scoring function for coarse-grained protein quality assessment.
Karasikov M, Pagès G, Grudinin S. Karasikov M, et al. Among authors: grudinin s. Bioinformatics. 2019 Aug 15;35(16):2801-2808. doi: 10.1093/bioinformatics/bty1037. Bioinformatics. 2019. PMID: 30590384
PEPSI-Dock: a detailed data-driven protein-protein interaction potential accelerated by polar Fourier correlation.
Neveu E, Ritchie DW, Popov P, Grudinin S. Neveu E, et al. Among authors: grudinin s. Bioinformatics. 2016 Sep 1;32(17):i693-i701. doi: 10.1093/bioinformatics/btw443. Bioinformatics. 2016. PMID: 27587691
KAP1 is an antiparallel dimer with a functional asymmetry.
Fonti G, Marcaida MJ, Bryan LC, Träger S, Kalantzi AS, Helleboid PJ, Demurtas D, Tully MD, Grudinin S, Trono D, Fierz B, Dal Peraro M. Fonti G, et al. Among authors: grudinin s. Life Sci Alliance. 2019 Aug 19;2(4):e201900349. doi: 10.26508/lsa.201900349. Print 2019 Aug. Life Sci Alliance. 2019. PMID: 31427381 Free PMC article.
Controlled-advancement rigid-body optimization of nanosystems.
Popov P, Grudinin S, Kurdiuk A, Buslaev P, Redon S. Popov P, et al. Among authors: grudinin s. J Comput Chem. 2019 Oct 15;40(27):2391-2399. doi: 10.1002/jcc.26016. Epub 2019 Jun 29. J Comput Chem. 2019. PMID: 31254466
Analytical symmetry detection in protein assemblies. I. Cyclic symmetries.
Pagès G, Kinzina E, Grudinin S. Pagès G, et al. Among authors: grudinin s. J Struct Biol. 2018 Aug;203(2):142-148. doi: 10.1016/j.jsb.2018.04.004. Epub 2018 Apr 27. J Struct Biol. 2018. PMID: 29705493
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.
Fajardo JE, Shrestha R, Gil N, Belsom A, Crivelli SN, Czaplewski C, Fidelis K, Grudinin S, Karasikov M, Karczyńska AS, Kryshtafovych A, Leitner A, Liwo A, Lubecka EA, Monastyrskyy B, Pagès G, Rappsilber J, Sieradzan AK, Sikorska C, Trabjerg E, Fiser A. Fajardo JE, et al. Among authors: grudinin s. Proteins. 2019 Dec;87(12):1283-1297. doi: 10.1002/prot.25816. Epub 2019 Oct 7. Proteins. 2019. PMID: 31569265
Deep convolutional networks for quality assessment of protein folds.
Derevyanko G, Grudinin S, Bengio Y, Lamoureux G. Derevyanko G, et al. Among authors: grudinin s. Bioinformatics. 2018 Dec 1;34(23):4046-4053. doi: 10.1093/bioinformatics/bty494. Bioinformatics. 2018. PMID: 29931128
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon Ł, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang SY, Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subraman SR, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, Chauvot de Beauchêne I, Maigret B, Devignes MD, Ruiz Echartea ME, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, Dapkūnas J, Olechnovič K, Venclovas Č, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, Weng Z, Guest JD, Gowthaman R, Pierce BG, Xu X, Duan R, Qiu L, Hou J, Ryan Merideth B, Ma Z, Cheng J, Zou X, Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue L, Jiménez-García B, van Noort CW, Honorato RV, Bonvin AMJJ, Wodak SJ. Lensink MF, et al. Among authors: grudinin s. Proteins. 2019 Dec;87(12):1200-1221. doi: 10.1002/prot.25838. Epub 2019 Oct 25. Proteins. 2019. PMID: 31612567
Analytical symmetry detection in protein assemblies. II. Dihedral and cubic symmetries.
Pagès G, Grudinin S. Pagès G, et al. Among authors: grudinin s. J Struct Biol. 2018 Sep;203(3):185-194. doi: 10.1016/j.jsb.2018.05.005. Epub 2018 Jun 15. J Struct Biol. 2018. PMID: 29902523
Protein model quality assessment using 3D oriented convolutional neural networks.
Pagès G, Charmettant B, Grudinin S. Pagès G, et al. Among authors: grudinin s. Bioinformatics. 2019 Sep 15;35(18):3313-3319. doi: 10.1093/bioinformatics/btz122. Bioinformatics. 2019. PMID: 30874723
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