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REL Domain of NFATc2 Binding to Five Types of DNA Using Protein Binding Microarrays.

Ray S, Tillo D, Durell SR, Khund-Sayeed S, Vinson C. Ray S, et al. ACS Omega. 2021 Feb 2;6(6):4147-4154. doi: 10.1021/acsomega.0c04069. eCollection 2021 Feb 16. ACS Omega. 2021. PMID: 33644537 Free PMC article.

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Fine tuning of virulence regulatory pathways in enteric bacteria in response to varying bile and oxygen concentrations in the gastrointestinal tract.

Sengupta C, Ray S, Chowdhury R. Sengupta C, et al. Among authors: ray s. Gut Pathog. 2014 Sep 9;6:38. doi: 10.1186/s13099-014-0038-9. eCollection 2014. Gut Pathog. 2014. PMID: 25349633 Free PMC article. Review.

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Custom DNA Microarrays Reveal Diverse Binding Preferences of Proteins and Small Molecules to Thousands of G-Quadruplexes.

Ray S, Tillo D, Boer RE, Assad N, Barshai M, Wu G, Orenstein Y, Yang D, Schneekloth JS Jr, Vinson C. Ray S, et al. ACS Chem Biol. 2020 Apr 17;15(4):925-935. doi: 10.1021/acschembio.9b00934. Epub 2020 Apr 7. ACS Chem Biol. 2020. PMID: 32216326 Free PMC article.

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Custom G4 Microarrays Reveal Selective G-Quadruplex Recognition of Small Molecule BMVC: A Large-Scale Assessment of Ligand Binding Selectivity.

Wu G, Tillo D, Ray S, Chang TC, Schneekloth JS Jr, Vinson C, Yang D. Wu G, et al. Among authors: ray s. Molecules. 2020 Jul 30;25(15):3465. doi: 10.3390/molecules25153465. Molecules. 2020. PMID: 32751510 Free PMC article.

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bZIP Dimers CREB1, ATF2, Zta, ATF3|cJun, and cFos|cJun Prefer to Bind to Some Double-Stranded DNA Sequences Containing 5-Formylcytosine and 5-Carboxylcytosine.

Ray S, Tillo D, Ufot A, Assad N, Durell S, Vinson C. Ray S, et al. Biochemistry. 2020 Sep 29;59(38):3529-3540. doi: 10.1021/acs.biochem.0c00475. Epub 2020 Sep 20. Biochemistry. 2020. PMID: 32902247 Free PMC article.

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The bZIP mutant CEBPB (V285A) has sequence specific DNA binding propensities similar to CREB1.

Ray S, Ufot A, Assad N, Singh J, Durell SR, Porollo A, Tillo D, Vinson C. Ray S, et al. Biochim Biophys Acta Gene Regul Mech. 2019 Apr;1862(4):486-492. doi: 10.1016/j.bbagrm.2019.02.002. Epub 2019 Feb 27. Biochim Biophys Acta Gene Regul Mech. 2019. PMID: 30825655 Free PMC article.

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The Epstein-Barr Virus B-ZIP Protein Zta Recognizes Specific DNA Sequences Containing 5-Methylcytosine and 5-Hydroxymethylcytosine.

Tillo D, Ray S, Syed KS, Gaylor MR, He X, Wang J, Assad N, Durell SR, Porollo A, Weirauch MT, Vinson C. Tillo D, et al. Among authors: ray s. Biochemistry. 2017 Nov 28;56(47):6200-6210. doi: 10.1021/acs.biochem.7b00741. Epub 2017 Nov 10. Biochemistry. 2017. PMID: 29072898 Free PMC article.

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GABPα and CREB1 Binding to Double Nucleotide Polymorphisms of Their Consensus Motifs and Cooperative Binding to the Composite ETS ⇔ CRE Motif (ACCGGAAGTGACGTCA).

Assad N, Tillo D, Ray S, Dzienny A, FitzGerald PC, Vinson C. Assad N, et al. Among authors: ray s. ACS Omega. 2019 Jun 6;4(6):9904-9910. doi: 10.1021/acsomega.9b00540. eCollection 2019 Jun 30. ACS Omega. 2019. PMID: 34151054 Free PMC article.

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Altering the Double-Stranded DNA Specificity of the bZIP Domain of Zta with Site-Directed Mutagenesis at N182.

Ray S, Tillo D, Assad N, Ufot A, Porollo A, Durell SR, Vinson C. Ray S, et al. ACS Omega. 2021 Dec 28;7(1):129-139. doi: 10.1021/acsomega.1c04148. eCollection 2022 Jan 11. ACS Omega. 2021. PMID: 35036684 Free PMC article.

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Replacing C189 in the bZIP domain of Zta with S, T, V, or A changes DNA binding specificity to four types of double-stranded DNA.

Ray S, Tillo D, Assad N, Ufot A, Deppmann C, Durell SR, Porollo A, Vinson C. Ray S, et al. Biochem Biophys Res Commun. 2018 Jul 2;501(4):905-912. doi: 10.1016/j.bbrc.2018.05.080. Epub 2018 May 18. Biochem Biophys Res Commun. 2018. PMID: 29772230 Free PMC article.

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