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Page 1
Refined template selection and combination algorithm significantly improves template-based modeling accuracy.
Runthala A, Chowdhury S. Runthala A, et al. J Bioinform Comput Biol. 2019 Apr;17(2):1950006. doi: 10.1142/S0219720019500069. J Bioinform Comput Biol. 2019. PMID: 31057073
Modeling accuracy of the algorithm is tested and evaluated on TBM-HA domain containing CASP8, CASP9 and CASP10 targets. On an average, this template ranking and selection algorithm improves GDT-TS, GDT-HA and TM_Score by 3.531, 4.814 and 0.022, respectively. ...
Modeling accuracy of the algorithm is tested and evaluated on TBM-HA domain containing CASP8, CASP9 and CASP10 targets. On an average …
Comparing risk of disinfection byproducts in drinking water under variable scenarios of seawater intrusion.
Chowdhury S. Chowdhury S. Sci Total Environ. 2023 Apr 20;870:161772. doi: 10.1016/j.scitotenv.2023.161772. Epub 2023 Jan 23. Sci Total Environ. 2023. PMID: 36702281
The reduction of risks for 2.0 %SW was due to the increase of bromoform (TBM), and decrease in bromodichloromethane (BDCM) and dibromochloromethane (DBCM) at 2.0 %SW. ...
The reduction of risks for 2.0 %SW was due to the increase of bromoform (TBM), and decrease in bromodichloromethane (BDCM) and dibrom …
Seawater intrusion in the coastal regions: effects on DBPs speciation and risks.
Chowdhury S. Chowdhury S. Environ Sci Pollut Res Int. 2025 Aug;32(38):22301-22312. doi: 10.1007/s11356-025-36954-8. Epub 2025 Sep 20. Environ Sci Pollut Res Int. 2025. PMID: 40973865
For 0.0% SW, averages of regulated THMs, HAAs and iodinated THMs (I-THMs) were 30.4, 27.9 and 0.13 g/L respectively while these concentrations were 106.3, 72.9 and 1.6 g/L in the samples with 2.0% SW respectively. From 0.0% to 2.0% SW, bromoform (TBM) and iodoform levels …
For 0.0% SW, averages of regulated THMs, HAAs and iodinated THMs (I-THMs) were 30.4, 27.9 and 0.13 g/L respectively while these concentrati …
Characterizing aging in the human brainstem using quantitative multimodal MRI analysis.
Lambert C, Chowdhury R, Fitzgerald TH, Fleming SM, Lutti A, Hutton C, Draganski B, Frackowiak R, Ashburner J. Lambert C, et al. Front Hum Neurosci. 2013 Aug 20;7:462. doi: 10.3389/fnhum.2013.00462. eCollection 2013. Front Hum Neurosci. 2013. PMID: 23970860 Free PMC article.
By utilizing a new method of brainstem segmentation, a large cohort of 100 healthy adults were assessed in this study for the effects of aging within the human brainstem in vivo. Using qMRI, tensor-based morphometry (TBM), and voxel-based quantification (VBQ), the volumetr …
By utilizing a new method of brainstem segmentation, a large cohort of 100 healthy adults were assessed in this study for the effects of agi …
Studying ventricular abnormalities in mild cognitive impairment with hyperbolic Ricci flow and tensor-based morphometry.
Shi J, Stonnington CM, Thompson PM, Chen K, Gutman B, Reschke C, Baxter LC, Reiman EM, Caselli RJ, Wang Y; Alzheimer's Disease Neuroimaging Initiative. Shi J, et al. Neuroimage. 2015 Jan 1;104:1-20. doi: 10.1016/j.neuroimage.2014.09.062. Epub 2014 Oct 5. Neuroimage. 2015. PMID: 25285374 Free PMC article.
Here we describe a novel ventricular morphometry system based on the hyperbolic Ricci flow method and tensor-based morphometry (TBM) statistics. Unlike prior ventricular surface parameterization methods, hyperbolic conformal parameterization is angle-preserving and does no …
Here we describe a novel ventricular morphometry system based on the hyperbolic Ricci flow method and tensor-based morphometry (TBM) …