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Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies.

Russel D, Lasker K, Webb B, Velázquez-Muriel J, Tjioe E, Schneidman-Duhovny D, Peterson B, Sali A. Russel D, et al. Among authors: tjioe e. PLoS Biol. 2012 Jan;10(1):e1001244. doi: 10.1371/journal.pbio.1001244. Epub 2012 Jan 17. PLoS Biol. 2012. PMID: 22272186 Free PMC article.

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Modeling of proteins and their assemblies with the Integrative Modeling Platform.

Webb B, Lasker K, Velázquez-Muriel J, Schneidman-Duhovny D, Pellarin R, Bonomi M, Greenberg C, Raveh B, Tjioe E, Russel D, Sali A. Webb B, et al. Among authors: tjioe e. Methods Mol Biol. 2014;1091:277-95. doi: 10.1007/978-1-62703-691-7_20. Methods Mol Biol. 2014. PMID: 24203340

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Integrative structure modeling of macromolecular assemblies from proteomics data.

Lasker K, Phillips JL, Russel D, Velázquez-Muriel J, Schneidman-Duhovny D, Tjioe E, Webb B, Schlessinger A, Sali A. Lasker K, et al. Among authors: tjioe e. Mol Cell Proteomics. 2010 Aug;9(8):1689-702. doi: 10.1074/mcp.R110.000067. Epub 2010 May 27. Mol Cell Proteomics. 2010. PMID: 20507923 Free PMC article.

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Topological models of heteromeric protein assemblies from mass spectrometry: application to the yeast eIF3:eIF5 complex.

Politis A, Schmidt C, Tjioe E, Sandercock AM, Lasker K, Gordiyenko Y, Russel D, Sali A, Robinson CV. Politis A, et al. Among authors: tjioe e. Chem Biol. 2015 Jan 22;22(1):117-28. doi: 10.1016/j.chembiol.2014.11.010. Epub 2014 Dec 24. Chem Biol. 2015. PMID: 25544043 Free PMC article.

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Modeling of proteins and their assemblies with the integrative modeling platform.

Webb B, Lasker K, Schneidman-Duhovny D, Tjioe E, Phillips J, Kim SJ, Velázquez-Muriel J, Russel D, Sali A. Webb B, et al. Among authors: tjioe e. Methods Mol Biol. 2011;781:377-97. doi: 10.1007/978-1-61779-276-2_19. Methods Mol Biol. 2011. PMID: 21877292

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SALIGN: a web server for alignment of multiple protein sequences and structures.

Braberg H, Webb BM, Tjioe E, Pieper U, Sali A, Madhusudhan MS. Braberg H, et al. Among authors: tjioe e. Bioinformatics. 2012 Aug 1;28(15):2072-3. doi: 10.1093/bioinformatics/bts302. Epub 2012 May 21. Bioinformatics. 2012. PMID: 22618536 Free PMC article.

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MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map.

Tjioe E, Lasker K, Webb B, Wolfson HJ, Sali A. Tjioe E, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W167-70. doi: 10.1093/nar/gkr490. Nucleic Acids Res. 2011. PMID: 21715383 Free PMC article.

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Detection of specific solvent rearrangement regions of an enzyme: NMR and ITC studies with aminoglycoside phosphotransferase(3')-IIIa.

Ozen C, Norris AL, Land ML, Tjioe E, Serpersu EH. Ozen C, et al. Among authors: tjioe e. Biochemistry. 2008 Jan 8;47(1):40-9. doi: 10.1021/bi701711j. Epub 2007 Dec 8. Biochemistry. 2008. PMID: 18067326

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Discovering gene functional relationships using FAUN (Feature Annotation Using Nonnegative matrix factorization).

Tjioe E, Berry MW, Homayouni R. Tjioe E, et al. BMC Bioinformatics. 2010 Oct 7;11 Suppl 6(Suppl 6):S14. doi: 10.1186/1471-2105-11-S6-S14. BMC Bioinformatics. 2010. PMID: 20946597 Free PMC article.

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Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex.

Shi Y, Fernandez-Martinez J, Tjioe E, Pellarin R, Kim SJ, Williams R, Schneidman-Duhovny D, Sali A, Rout MP, Chait BT. Shi Y, et al. Among authors: tjioe e. Mol Cell Proteomics. 2014 Nov;13(11):2927-43. doi: 10.1074/mcp.M114.041673. Epub 2014 Aug 26. Mol Cell Proteomics. 2014. PMID: 25161197 Free PMC article.

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